Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46060 303 / 1e-105 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 301 / 7e-105 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G59840 300 / 9e-105 Ras-related small GTP-binding family protein (.1) AT5G03520 290 / 2e-100 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT3G09900 284 / 3e-98 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT1G02130 194 / 4e-63 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G17530 185 / 3e-59 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT3G11730 183 / 1e-58 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G47200 183 / 1e-58 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17160 151 / 4e-46 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007698 [exp] 316 / 5e-111 AT3G46060 378 / 1e-135 RAB GTPase homolog 8A (.1.2.3) Lus10024423 [exp] 314 / 3e-110 AT3G46060 376 / 7e-135 RAB GTPase homolog 8A (.1.2.3) Lus10040856 [exp] 308 / 9e-108 AT3G46060 366 / 7e-131 RAB GTPase homolog 8A (.1.2.3) Lus10005890 [exp] 305 / 3e-106 AT3G46060 396 / 2e-142 RAB GTPase homolog 8A (.1.2.3) Lus10023430 [exp] 301 / 1e-104 AT3G46060 364 / 3e-129 RAB GTPase homolog 8A (.1.2.3) Lus10005443 [exp] 298 / 1e-103 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3) Lus10004944 [exp] 291 / 3e-101 AT3G46060 348 / 1e-123 RAB GTPase homolog 8A (.1.2.3) Lus10003984 [exp] 249 / 3e-85 AT3G46060 289 / 5e-101 RAB GTPase homolog 8A (.1.2.3) Lus10000595 [exp] 186 / 1e-59 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G051700 [exp] 308 / 1e-107 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 305 / 1e-106 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 298 / 1e-103 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.009G027900 [exp] 292 / 2e-101 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G080400 [exp] 188 / 1e-60 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 185 / 2e-59 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.002G138400 [exp] 185 / 2e-59 AT1G02130 393 / 1e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G152800 [exp] 184 / 3e-59 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.003G081800 [exp] 184 / 5e-59 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.004G226600 [exp] 179 / 6e-57 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10025309 pacid=23157313 polypeptide=Lus10025309 locus=Lus10025309.g ID=Lus10025309.BGIv1.0 annot-version=v1.0 ATGTTTGGTAAATGCACGACTCATTGGAACATATTTGAAGCGCGCCTTGCTAGCTGTGTGGGTAAGAGTTGCCTCCTTCTACGTTTCTCAGATGGTTCCT TCACTACTAGCTTCATTACAACCATTGGAATCGATTTCAAGATAAGGACAATTGAGCTCGATGGGAAGCGAATCAAGTTGCAAATATGGGATACTGCTGG TCAAGAGCGTTTCCGTACAATTACAACTGCTTACTATAGGGGAGCTATGGGCATTTTGCTTGTGTATGATGTCACTGATGAGTCATCTTTTAATAATATC AGGAATTGGATTCGCAATATTGAACAACATGCTTCTGATAATGTTAACAAGATCTTGGTGGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTAC CTACCGCAAAGGGCCAGGCACTTGCAGATGAATATGGCATCAAGTTCTTCGAGACTAGTGCAAAGACAAACTTAAACGTGGAGGAGGTTTTCTTTTCAAT AGCTAGGGACATCAAGCAAAGACTTGCAGACACGGATTCAAAGTCTGAGCCACAGACGATCAAGATTAATCAACCCGATCAAGCTGGTGGAGCGAGTCAG GCAGCACAGAAGTCGGCTTGCTGTGGGTCTTAA
AA sequence Show only first row Show all	>Lus10025309 pacid=23157313 polypeptide=Lus10025309 locus=Lus10025309.g ID=Lus10025309.BGIv1.0 annot-version=v1.0 MFGKCTTHWNIFEARLASCVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQTIKINQPDQAGGASQ AAQKSACCGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	0	1
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10034375 [exp]	1.0	0.9560
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	3.0	0.9300
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	4.0	0.9284
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10023478 [exp]	4.2	0.9247
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	4.7	0.9344
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	4.8	0.8984
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	5.3	0.9057
AT1G49590			C2H2 and C2HC zinc fingers sup...		Lus10027913 [exp]	5.3	0.9229
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	6.0	0.9025
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	6.3	0.9188

Compare expression of checked genes

Lus10025309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.