Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28720 185 / 3e-61 Histone superfamily protein (.1) AT3G45980 183 / 2e-60 H2B, HTB9 HISTONE H2B, Histone superfamily protein (.1) AT5G59910 181 / 1e-59 HTB4 Histone superfamily protein (.1) AT2G37470 180 / 2e-59 Histone superfamily protein (.1) AT3G53650 179 / 3e-59 Histone superfamily protein (.1) AT1G07790 179 / 5e-59 HTB1 Histone superfamily protein (.1) AT3G46030 179 / 6e-59 HTB11 Histone superfamily protein (.1) AT5G02570 171 / 6e-56 Histone superfamily protein (.1) AT3G09480 168 / 6e-55 Histone superfamily protein (.1) AT5G22880 165 / 2e-53 HTB2, H2B HISTONE H2B, histone B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017456 [exp] 194 / 9e-65 AT2G28720 226 / 1e-77 Histone superfamily protein (.1) Lus10037371 [exp] 186 / 1e-61 AT3G45980 233 / 3e-80 HISTONE H2B, Histone superfamily protein (.1) Lus10023753 [exp] 184 / 5e-61 AT2G37470 203 / 7e-69 Histone superfamily protein (.1) Lus10041347 [exp] 183 / 1e-60 AT3G45980 226 / 3e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10013544 [exp] 182 / 2e-60 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10016156 [exp] 180 / 2e-59 AT3G45980 231 / 1e-79 HISTONE H2B, Histone superfamily protein (.1) Lus10017292 [exp] 175 / 2e-57 AT3G45980 226 / 2e-77 HISTONE H2B, Histone superfamily protein (.1) Lus10028826 [exp] 174 / 6e-56 AT2G28720 216 / 3e-72 Histone superfamily protein (.1) Lus10005897 [exp] 171 / 9e-56 AT3G45980 244 / 1e-84 HISTONE H2B, Histone superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230701 [exp] 192 / 6e-64 AT5G59910 191 / 3e-63 Histone superfamily protein (.1) Potri.017G123700 [exp] 190 / 2e-63 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091200 [exp] 183 / 2e-60 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.009G028001 [exp] 183 / 2e-60 AT5G02570 188 / 2e-62 Histone superfamily protein (.1) Potri.004G091400 [exp] 181 / 8e-60 AT2G28720 186 / 1e-61 Histone superfamily protein (.1) Potri.008G030500 [exp] 175 / 1e-57 AT5G59910 190 / 4e-63 Histone superfamily protein (.1) Potri.008G030400 [exp] 175 / 2e-57 AT5G59910 191 / 2e-63 Histone superfamily protein (.1) Potri.008G030600 [exp] 175 / 2e-57 AT5G59910 188 / 2e-62 Histone superfamily protein (.1) Potri.010G230801 [exp] 173 / 1e-56 AT1G07790 205 / 2e-69 Histone superfamily protein (.1) Potri.010G230600 [exp] 173 / 1e-56 AT1G07790 205 / 3e-69 Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10025313 pacid=23157428 polypeptide=Lus10025313 locus=Lus10025313.g ID=Lus10025313.BGIv1.0 annot-version=v1.0 ATGGCGCAGAAGGGGGAGAAAAAGCCTGCATTGGCGGACAAATCCCCAACCGCATCAGCCGAGAAGAAACCGAAGATCGAGAAGAGGGTGACCAATGAAG GAGGCGCCGACAAGAAAAAGAAGAAGGTGAAGAAGAGCAGCGAGACGTACAAGATCTACATCTTCATGGTTTTGAAGCATGTGCATCCAGACATCGGGAT CTCCAACAAAGCGATCGGGATCATGAACAGTTTCATCAACGACATTTTCGAGAAGCTCGCCCACGAGGCGTCGCGATTGGCCCGCTACAATAAGAAGCCT ATGAACACGTTGAGGGAGATCCAGACCGCCGTCCGATTGGTTCTCCCTGGTGAACTCGCCAAGCACGCCGTTTCTGAGGGCACCAAGGCGGTTACCAAAT TCACCAGCTCTTAA
AA sequence Show only first row Show all	>Lus10025313 pacid=23157428 polypeptide=Lus10025313 locus=Lus10025313.g ID=Lus10025313.BGIv1.0 annot-version=v1.0 MAQKGEKKPALADKSPTASAEKKPKIEKRVTNEGGADKKKKKVKKSSETYKIYIFMVLKHVHPDIGISNKAIGIMNSFINDIFEKLAHEASRLARYNKKP MNTLREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	0	1
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	3.5	0.9461
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	5.3	0.9486
					Lus10006918 [exp]	7.7	0.9466
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	9.5	0.9466
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10000839 [exp]	9.9	0.8770
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10033658 [exp]	10.8	0.8288
AT1G04670			unknown protein		Lus10004041 [exp]	11.0	0.9466
AT3G53690			RING/U-box superfamily protein...		Lus10042610 [exp]	12.2	0.9466
					Lus10007508 [exp]	13.4	0.9466
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	14.5	0.7398

Compare expression of checked genes

Lus10025313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.