Plant FIBer expression Database

Lus10025314 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53670 51 / 7e-08 unknown protein
AT2G37480 47 / 2e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024420
[exp]
328 / 3e-115 AT2G37480 67 / 1e-13 unknown protein
Lus10003982
[exp]
169 / 2e-52 AT2G37480 91 / 2e-22 unknown protein
Lus10023755
[exp]
159 / 3e-48 AT2G37480 90 / 4e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G082100
[exp]
107 / 1e-28 AT3G53670 52 / 3e-08 unknown protein
PFAM info
Representative CDS sequence
>Lus10025314 pacid=23157430 polypeptide=Lus10025314 locus=Lus10025314.g ID=Lus10025314.BGIv1.0 annot-version=v1.0
ATGGACATTGGCCACCGTGATGCTGGTGATTCTCCGGTGGATGCTAAAGAAGTAAATCTCGAGAATTTGAGTTCTGAAACTACTCTCGAAACAGGTCGAT
CTGAAGGAATCGATCCATCTGGACCTCAACCTGTTGTCAGTAAGTGCTTGGAGGATTCCACAACGACCTCTTCTCTTGAAAACAATGGCCGGGAGATGGC
ATTGCCGGCTTTGTCCTCGGATCAGCCTCTGCAACACACCAAGTCTATGCCGATCAAATCCGCCATGAAAGGCAGCCGAGAGAAAGCGGGCAAGGAAGCG
AAGAAGCTGAGTGTGAGTTGGGCTCCTGATGTGTACGATCCAGTCCCTAATTCTCTGTGTCATACAGTTAAGAGCAGCAGCAGCAGCAGCAGTAAGAAGA
AATCCAGGAAAGACAAAGACAGCAAGAAGAATGGGAAGAAGGGACAAAAGGGCAACAGCTACTCGTCTCGAGGAAGCAGCAGTAGTAGCAAGGACAAGAA
GCAGGTTTGGAGAAAGCCTGCTGCGAAGTCTTATAAAGCACTGGATATCGAGGAGGTTGGATACGGTAGTGATGGTTGTAGTAGTGTTGGGTTCGAGGTT
GCGAGTCCGGACCACTGCGGGAGTAGCTTCCTTAAGCAGTCTGTAACGGAGTTCCATTACTCTGTTGCAGAGGCATTGTGA
AA sequence
>Lus10025314 pacid=23157430 polypeptide=Lus10025314 locus=Lus10025314.g ID=Lus10025314.BGIv1.0 annot-version=v1.0
MDIGHRDAGDSPVDAKEVNLENLSSETTLETGRSEGIDPSGPQPVVSKCLEDSTTTSSLENNGREMALPALSSDQPLQHTKSMPIKSAMKGSREKAGKEA
KKLSVSWAPDVYDPVPNSLCHTVKSSSSSSSKKKSRKDKDSKKNGKKGQKGNSYSSRGSSSSSKDKKQVWRKPAAKSYKALDIEEVGYGSDGCSSVGFEV
ASPDHCGSSFLKQSVTEFHYSVAEAL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37480 unknown protein Lus10025314
[exp]
0 1
AT5G61540 N-terminal nucleophile aminohy... Lus10009560
[exp]
1.0 0.9433
AT2G42130 Plastid-lipid associated prote... Lus10012003
[exp]
1.4 0.9296
AT3G10260 Reticulon family protein (.1.2... Lus10020718
[exp]
2.2 0.9167
AT4G21380 ARK3 receptor kinase 3 (.1) Lus10027229
[exp]
3.7 0.8983
AT1G76405 unknown protein Lus10016039
[exp]
4.8 0.8942
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Lus10005235
[exp]
4.9 0.9224
AT4G24120 ATYSL1, YSL1 YELLOW STRIPE like 1 (.1) Lus10023241
[exp]
5.3 0.9110
AT5G18640 alpha/beta-Hydrolases superfam... Lus10033968
[exp]
7.9 0.9248
AT5G03430 phosphoadenosine phosphosulfat... Lus10013826
[exp]
9.5 0.8994
AT2G39890 ATPROT1, ProT1 proline transporter 1 (.1.2) Lus10009877
[exp]
10.9 0.8588

Lus10025314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.