Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59880 152 / 4e-46 ADF3 actin depolymerizing factor 3 (.1.2) AT3G46010 151 / 2e-45 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT5G59890 144 / 5e-43 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT3G46000 142 / 2e-42 ADF2 actin depolymerizing factor 2 (.1) AT1G01750 134 / 4e-39 ADF11 actin depolymerizing factor 11 (.1) AT4G00680 132 / 2e-38 ADF8 actin depolymerizing factor 8 (.1) AT5G52360 129 / 5e-37 ADF10 actin depolymerizing factor 10 (.1) AT4G25590 126 / 5e-36 ADF7 actin depolymerizing factor 7 (.1) AT2G31200 99 / 1e-25 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT4G34970 92 / 8e-23 ADF9 actin depolymerizing factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024418 [exp] 172 / 1e-53 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10024417 [exp] 169 / 1e-52 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 169 / 1e-52 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10023428 [exp] 159 / 3e-46 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10040307 [exp] 154 / 7e-45 AT5G59890 243 / 2e-81 actin depolymerizing factor 4 (.1.2) Lus10027474 [exp] 124 / 5e-35 AT5G52360 244 / 6e-85 actin depolymerizing factor 10 (.1) Lus10038859 [exp] 120 / 1e-33 AT4G25590 232 / 2e-80 actin depolymerizing factor 7 (.1) Lus10014977 [exp] 119 / 3e-33 AT4G25590 233 / 1e-80 actin depolymerizing factor 7 (.1) Lus10039229 [exp] 114 / 4e-31 AT5G52360 231 / 6e-80 actin depolymerizing factor 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G028200 [exp] 162 / 8e-50 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236700 [exp] 161 / 1e-49 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.009G028100 [exp] 159 / 1e-48 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.010G208500 [exp] 158 / 3e-48 AT5G59890 255 / 4e-89 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 157 / 4e-48 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 156 / 2e-47 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.001G106200 [exp] 137 / 4e-40 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1) Potri.012G141600 [exp] 135 / 2e-39 AT4G25590 254 / 5e-89 actin depolymerizing factor 7 (.1) Potri.015G144500 [exp] 135 / 2e-39 AT4G25590 257 / 6e-90 actin depolymerizing factor 7 (.1) Potri.003G125500 [exp] 132 / 2e-38 AT4G00680 234 / 1e-80 actin depolymerizing factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10025318 pacid=23157349 polypeptide=Lus10025318 locus=Lus10025318.g ID=Lus10025318.BGIv1.0 annot-version=v1.0 ATGGCGGATGTGATGGGCTCTTCTCATGGTGGTGATGGAGGTGGGGATGAATTTCCCCACAATTTGGACTTGTCGGGTGGTAGTTGTTGTGGTAGTGAAG GGAATTTTGATTATGTAGATAAGACTGATGAAGAAGTAGTGACAATGAAGAAGAAGAAGAAGAAACTGTGTCGACAAATTCCAGGGAAGGATAGGGGACG TTGGCATGTCTTGGTCCAAGCATTCTCAACCGCTTCATTGGGGATGTGGCCAAGGACATCAACCACCTCTATATTAGTGCCTCGAACTGGAGACTACAAG TTCATAAGGTCAAGAAGCAAGAGTTATATAGTCGGTAAATCAAGGAATATGCCATTGGGCATCGCTGAAGTGCAATGGGGTGCATATTTGAAGATACACA TGGATGAAGAGAAGAAGAAAAAAGTGAAGCAGAACAAGGAAAAGAAGGTGAAGCAAAAGAGGACCATGCAGTATGGACTTCTAGATCCAGCAGAAGTGGT TTCTTTGGGTAAGCGAACAAAGACCATCGTTTATGACTGTGTATATCACTCTAAGGCGAATGCAGCGTCTGGATTTGCAGTCGATGATGACTGCAAACTG AAGTTCCTGGAGCTGAAGGCAAAAAGAACCTACCGCTTCATTGTTTTCAAGATTGAGGAGAAGCAAAAGCAAGTTATCGTGGAGAAACTTGGTGAGCCAG GCCAAAGCTACGATGATTTGGCTGCAGCCTCCCTGCCGATGAGTGCCGCTATGCTGTCTCTTGATACATCAAGGGTGAGAAGCAAGATGATCTACGCCAG CTCAAAGGACAGATTCAAGAGAGAGCTTGACGGAATACAGGTCGAATTGCAAGCAACTGATCCAACTGAGATGGGGCTTGACGTGTTCAGAAGCTGTGCC AACTGA
AA sequence Show only first row Show all	>Lus10025318 pacid=23157349 polypeptide=Lus10025318 locus=Lus10025318.g ID=Lus10025318.BGIv1.0 annot-version=v1.0 MADVMGSSHGGDGGGDEFPHNLDLSGGSCCGSEGNFDYVDKTDEEVVTMKKKKKKLCRQIPGKDRGRWHVLVQAFSTASLGMWPRTSTTSILVPRTGDYK FIRSRSKSYIVGKSRNMPLGIAEVQWGAYLKIHMDEEKKKKVKQNKEKKVKQKRTMQYGLLDPAEVVSLGKRTKTIVYDCVYHSKANAASGFAVDDDCKL KFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPGQSYDDLAAASLPMSAAMLSLDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEMGLDVFRSCA N

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	0	1
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	1.4	0.8566
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	5.3	0.8176
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	7.4	0.8014
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	13.9	0.8034
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	18.7	0.7855
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	19.4	0.7718
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	21.4	0.7841
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	24.0	0.7770
AT2G04865			Aminotransferase-like, plant m...		Lus10006393 [exp]	25.9	0.7845
AT2G32760			unknown protein		Lus10037826 [exp]	31.7	0.7948

Compare expression of checked genes

Lus10025318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.