Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46010 251 / 2e-87 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT5G59890 247 / 8e-86 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT5G59880 246 / 2e-85 ADF3 actin depolymerizing factor 3 (.1.2) AT3G46000 243 / 3e-84 ADF2 actin depolymerizing factor 2 (.1) AT4G00680 231 / 2e-79 ADF8 actin depolymerizing factor 8 (.1) AT1G01750 229 / 5e-79 ADF11 actin depolymerizing factor 11 (.1) AT4G25590 228 / 3e-78 ADF7 actin depolymerizing factor 7 (.1) AT5G52360 221 / 1e-75 ADF10 actin depolymerizing factor 10 (.1) AT2G31200 191 / 1e-63 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT4G34970 183 / 2e-60 ADF9 actin depolymerizing factor 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024417 [exp] 285 / 1e-100 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10024418 [exp] 280 / 8e-99 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10023428 [exp] 250 / 7e-84 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10040307 [exp] 246 / 5e-83 AT5G59890 243 / 2e-81 actin depolymerizing factor 4 (.1.2) Lus10027474 [exp] 218 / 1e-74 AT5G52360 244 / 6e-85 actin depolymerizing factor 10 (.1) Lus10038859 [exp] 212 / 4e-72 AT4G25590 232 / 2e-80 actin depolymerizing factor 7 (.1) Lus10014977 [exp] 211 / 7e-72 AT4G25590 233 / 1e-80 actin depolymerizing factor 7 (.1) Lus10039229 [exp] 205 / 2e-69 AT5G52360 231 / 6e-80 actin depolymerizing factor 10 (.1) Lus10022933 [exp] 193 / 2e-64 AT2G31200 254 / 9e-89 actin depolymerizing factor 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G236700 [exp] 261 / 3e-91 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.009G028100 [exp] 256 / 2e-89 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.010G208500 [exp] 255 / 3e-89 AT5G59890 255 / 4e-89 actin depolymerizing factor 4 (.1.2) Potri.009G028200 [exp] 254 / 1e-88 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 253 / 4e-88 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.008G052100 [exp] 252 / 7e-88 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.015G144500 [exp] 236 / 2e-81 AT4G25590 257 / 6e-90 actin depolymerizing factor 7 (.1) Potri.012G141600 [exp] 234 / 5e-81 AT4G25590 254 / 5e-89 actin depolymerizing factor 7 (.1) Potri.001G106200 [exp] 232 / 7e-80 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1) Potri.003G125500 [exp] 227 / 4e-78 AT4G00680 234 / 1e-80 actin depolymerizing factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10025319 pacid=23157423 polypeptide=Lus10025319 locus=Lus10025319.g ID=Lus10025319.BGIv1.0 annot-version=v1.0 ATGGCGAACGCAGCGTCTGGATTTGCAGTCGATGATGACTGCAAACTGAAATTCCTGGAGCTAAAGGCAAAAAGAACGTATCGCTTTGTTGTTTTCAAGA TCGAGGAGAAGCAAAAGCAAGTCATTGTGGAGAAACTTGGTGAGCCAGGTGAAAGCTACGATGATTTCGCTGCTTGCCTCCCTGCCGATGAGTGCCGCTA TGCTGTATTTGATTTTGACTTCGTCACCAAGGAGAACTGCCAGAAGAGCAGAATATTCTTCATCGCATGGTCTCCGGATACAGCAAGGGTGAGAAGCAAG ATGATTTACGCCAGTTCAAAGGACAGATTCAAGAGAGAGCTTGACGGGATTCAGATCGAATTGCAAGCGACTGATCCAACCGAAATGGGACTTGACGTGT TTAAAAGCCGTGCCAACTGA
AA sequence Show only first row Show all	>Lus10025319 pacid=23157423 polypeptide=Lus10025319 locus=Lus10025319.g ID=Lus10025319.BGIv1.0 annot-version=v1.0 MANAASGFAVDDDCKLKFLELKAKRTYRFVVFKIEEKQKQVIVEKLGEPGESYDDFAACLPADECRYAVFDFDFVTKENCQKSRIFFIAWSPDTARVRSK MIYASSKDRFKRELDGIQIELQATDPTEMGLDVFKSRAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10025319 [exp]	0	1
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	2.0	0.8512
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	2.6	0.8657
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10008081 [exp]	4.9	0.8500
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	4.9	0.8035
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	5.5	0.8335
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10040187 [exp]	5.8	0.7754
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10041427 [exp]	6.3	0.7708
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Lus10033449 [exp]	6.5	0.7705
AT5G25450			Cytochrome bd ubiquinol oxidas...		Lus10013113 [exp]	7.7	0.8429
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	9.5	0.8051

Compare expression of checked genes

Lus10025319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.