Plant FIBer expression Database

Lus10025320 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37530 70 / 2e-16 unknown protein
AT1G07795 59 / 3e-12 unknown protein
AT2G28725 54 / 2e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024416
[exp]
162 / 7e-53 AT2G37530 105 / 2e-30 unknown protein
Lus10023761
[exp]
88 / 2e-23 AT1G07795 89 / 5e-24 unknown protein
Lus10005894
[exp]
52 / 3e-09 AT1G07795 97 / 5e-27 unknown protein
Lus10040852
[exp]
51 / 5e-09 AT1G07795 97 / 4e-27 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G083800
[exp]
86 / 6e-23 AT2G37530 93 / 1e-25 unknown protein
PFAM info
Representative CDS sequence
>Lus10025320 pacid=23157328 polypeptide=Lus10025320 locus=Lus10025320.g ID=Lus10025320.BGIv1.0 annot-version=v1.0
ATGTCTCTTTCTTCGTTCCCTTATCTCCGCCGGCGACTGCTGCCAAAGCTGCCCCTGCTAATCTACGCCACCACGTGGACCACTCTTCTTACCGTGATTG
TAGGCGTGGCTTCGTTCTCGCCAGAGTTCGCCTTCGTATCCACTGTCACACAAGTTCAGTCCCCGGATTCAGGAGACTGTAGAAGGGAAGGAATGGTTCG
AGTTCCATTGGACGTTTCTGGAGAAGTGTTTTGTTTGCCTGCTCGGCTATTTGCCAAGTCAGACATTGACTTCCTAGTTCCGCCAGCGTTCGCAGCTGTC
GTGGTGGCTGGGGCCGCTTGGGTGGTTCGATCAATTGCGCTGTGGGAAGTGGAGGAAGAGGCCGGTTAA
AA sequence
>Lus10025320 pacid=23157328 polypeptide=Lus10025320 locus=Lus10025320.g ID=Lus10025320.BGIv1.0 annot-version=v1.0
MSLSSFPYLRRRLLPKLPLLIYATTWTTLLTVIVGVASFSPEFAFVSTVTQVQSPDSGDCRREGMVRVPLDVSGEVFCLPARLFAKSDIDFLVPPAFAAV
VVAGAAWVVRSIALWEVEEEAG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37530 unknown protein Lus10025320
[exp]
0 1
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10042612
[exp]
6.0 0.9002
AT5G13580 ABCG6 ATP-binding cassette G6, ABC-2... Lus10030306
[exp]
9.9 0.8882
AT1G05260 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Pe... Lus10027164
[exp]
11.0 0.8683
Lus10009436
[exp]
12.7 0.8829
AT1G54540 Late embryogenesis abundant (L... Lus10031888
[exp]
15.1 0.8871
AT3G22600 Bifunctional inhibitor/lipid-t... Lus10022066
[exp]
16.6 0.8881
AT4G21440 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 10... Lus10018525
[exp]
18.2 0.8558
AT1G03700 Uncharacterised protein family... Lus10015443
[exp]
18.6 0.8836
AT1G68810 bHLH bHLH030 basic helix-loop-helix (bHLH) ... Lus10001885
[exp]
19.0 0.8756
AT5G13580 ABCG6 ATP-binding cassette G6, ABC-2... Lus10001972
[exp]
21.7 0.8827

Lus10025320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.