Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53720 736 / 0 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT3G17630 607 / 0 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 597 / 0 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 590 / 0 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT2G13620 553 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G64170 553 / 0 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G05580 315 / 1e-94 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 300 / 3e-89 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT5G37060 267 / 3e-77 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) AT5G58460 257 / 1e-73 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032332 [exp] 618 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 596 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10030013 [exp] 540 / 2e-180 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 538 / 3e-179 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017541 [exp] 474 / 6e-153 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10040881 [exp] 345 / 9e-106 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024717 [exp] 334 / 2e-105 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10004932 [exp] 329 / 1e-99 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025325 [exp] 303 / 6e-98 AT3G53720 324 / 5e-106 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054700 [exp] 758 / 0 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.003G134900 [exp] 627 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 622 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 621 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 613 / 0 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 611 / 0 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 514 / 4e-171 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 346 / 3e-106 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 333 / 6e-102 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 319 / 2e-96 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10025322 pacid=23157308 polypeptide=Lus10025322 locus=Lus10025322.g ID=Lus10025322.BGIv1.0 annot-version=v1.0 ATGTCAACAACACTAAACATATCCAACATCAAAACGTCGTCGGACGGAGCTTGGCAAGGCGACAACCCTCTCAACTCAGCTTTCCCCTTGCTCATCCTCC AGACAATCATCGTCCTCGTCATCACCCGCTCCCTCGCCTTCCTTCTCCGCCCCTTCCGCCAGCCACGTGTCATCGCAGAAATTCTGGGTGGGATCCTGCT TGGGCCGTCTGCATTAGGCCGAAACCAAGAGCTCTTCCGCCTCGTATTCCCATCGTGGAGCACTCCCATCCTGGAATCCGTAGCGAGCATTGGGCTTTTA TTTTTCTTATTCTTAGTGGGCCTGGAGCTAGACTTAGCCTCCATTCGTAAGTCCAGCAAGCGAGCCTTAGCAATCGCACTCGCCGGAATCTCCCTCCCTT TCCTCTTCGCAGCTGTTATCTCCTACTTCCTCCGCCGTGCCGCCGCTGCTGCTCGTGGACCGAACCATTCCCCACACGACGAACCCCCCTACGGCCAGTA TCTACTCTTCCTCGGAGTGGCTCTCTCCATCACAGCTTTCCCTGTTCTCGCCCGCATCCTAGCAGAGCTCAAGCTGCTAACCACCCAAGTGGGCCAGACC GCTATGGCAGCAGCTGCGTTCAACGATGTCGTTGCATGGATTCTCCTTGCACTAGCTGTCGCCTTAGCTGGGCCGAGTAAGGGCCCATTGGTATCCGTTT GGATCCTATTATCAGGCGTGGGCTTCGTGGCGTTTATGTTGCTGGTGGTCCGACGTGTCATGGAGTGGATCGCCAAGAGATGCTCCTCGCCGTCGCCGGA GCAGGCCTTCGCCAACGAGGCGTACATCTGCCTGACACTGGCAGGGGTGATGGCGGCAGGGTTTATGACAGATCTGATCGGGATCCACTCGATATTCGGG GCGTTCGTGTTTGGATTGACGATTCCGAAGGGGGGAGAGTTCGCCGGGAGGCTGATGAAGCGGATCGAGGATTTCGTCACCGGTTTACTGCTGCCGCTTT ACTTTGCATCGAGCGGACTGAAGACGGACGTGGCGAAGATCCAGGGGGCGGAGGCTTGGGGATTTCTGGCGGTGGTGATCTCCACGGCGTGCGTCGGGAA GATACTTGGGACGTTCGTGGTGGCGATGATGTGTATGATTCCGGCGCGGGAGTCGTTGGCGTTAGGGGTACTGATGAACACCAAAGGACTTGTGGAGCTG ATTGTCCTGAATATCGGGAGGGAGAAAAAGGTACTGAACGACGAAATGTTTGCGATTCTAGTGCTAATGGCACTCTTCACAACTTTCATGACCACTCCCA CCGTCATGGCCATTTACAAGCCTTCCCAGGCCCGCCGTCGATCACAGGAACTCCAAGAGAACCCCCAACCGGAGCTCCGAATCCTAGCCTGCATCCACGG CTCGAGGAACGTACCATCACTAATCAACCTAATAGACTCCGCCACAACAGCCGTCACCAAAACCGCCCTCCAAATTTTCGCCATGCAGCTGGTGGAACTC ACAGACCGGTCTTCCTCCATAATGATGGTCCACCGAGCCCGGAGGAACGGCCTCCCGTTCATCGACTACTGCTTCACCGGCACCGCCTCAGGGAGGAGTA GTCGACCCTCATCCAACGAGCGCATCGAGTCAGCTTTCAACGCCTACTGCCACGCAAGCAACGTGACCGTCCACAACTCGACGGCCATATCGGCGCTGCA CTCCATGCACGAGGACATCTGCCACGTGGCGGAAGACAAGAGGGTGTCGTTGATCATCCTGCCTTTCCACAAGCAATGGACGGCAGGGGAAGGGAAAGGC GACGAGGGAGTTGAGAATATCGGGAATGGATGGAGAGTTGTGAATCGGAGGGTGTTGGAGACTGCGCAATGCTCGGTTGCGGTGTTTGTGGACCGTGGAT TCGGTGGCAACCGGTTGGATCATCCTGGTTCCGCTAAGAAGGTATGTGTTGTGTTCTTTGGAGGGAAAGATGATCGCGCGGCTCTAAAAATCGGGTATGG AATGGCTGATAACCCGGTGATTAGTTTGACAGTGATCAAATTCTTCCATAACAGAGAGGAGATAAAATATGCATGCGAAGTGGAGAAAGTAGGGACCAGT AGTATTGAATATGTGGAGAAAGAGGTGGAGGTGGGAAAGGAAGAAGAGGTGTTAGTTAGCACACTGAGGGGCAAAGAATTCCAACTAATAGTGGTGGGGA AGGGAGCTAAGTTAGGGAAACTACTAGTGGAAGAAGATGATGAGGAAGTAATTGAGAATAAAGAACTGGGGATTATCGGGGATATATTAGTTTCATCTGC AGTAGGGATAGATGCATCTCTGCTGGTTATACAGCACCATGGACATGAACATGATGATGATGATGATGATGATGGCGGTGAGGAGATCATGAAAGGGAAA GAAAGTATTATTGTTGGCGAGTCCTCTGTTTGA
AA sequence Show only first row Show all	>Lus10025322 pacid=23157308 polypeptide=Lus10025322 locus=Lus10025322.g ID=Lus10025322.BGIv1.0 annot-version=v1.0 MSTTLNISNIKTSSDGAWQGDNPLNSAFPLLILQTIIVLVITRSLAFLLRPFRQPRVIAEILGGILLGPSALGRNQELFRLVFPSWSTPILESVASIGLL FFLFLVGLELDLASIRKSSKRALAIALAGISLPFLFAAVISYFLRRAAAAARGPNHSPHDEPPYGQYLLFLGVALSITAFPVLARILAELKLLTTQVGQT AMAAAAFNDVVAWILLALAVALAGPSKGPLVSVWILLSGVGFVAFMLLVVRRVMEWIAKRCSSPSPEQAFANEAYICLTLAGVMAAGFMTDLIGIHSIFG AFVFGLTIPKGGEFAGRLMKRIEDFVTGLLLPLYFASSGLKTDVAKIQGAEAWGFLAVVISTACVGKILGTFVVAMMCMIPARESLALGVLMNTKGLVEL IVLNIGREKKVLNDEMFAILVLMALFTTFMTTPTVMAIYKPSQARRRSQELQENPQPELRILACIHGSRNVPSLINLIDSATTAVTKTALQIFAMQLVEL TDRSSSIMMVHRARRNGLPFIDYCFTGTASGRSSRPSSNERIESAFNAYCHASNVTVHNSTAISALHSMHEDICHVAEDKRVSLIILPFHKQWTAGEGKG DEGVENIGNGWRVVNRRVLETAQCSVAVFVDRGFGGNRLDHPGSAKKVCVVFFGGKDDRAALKIGYGMADNPVISLTVIKFFHNREEIKYACEVEKVGTS SIEYVEKEVEVGKEEEVLVSTLRGKEFQLIVVGKGAKLGKLLVEEDDEEVIENKELGIIGDILVSSAVGIDASLLVIQHHGHEHDDDDDDDGGEEIMKGK ESIIVGESSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	0	1
AT1G23850			unknown protein		Lus10030860 [exp]	2.2	0.9248
					Lus10042963 [exp]	3.7	0.9194
					Lus10024104 [exp]	3.9	0.9178
AT5G36930			Disease resistance protein (TI...		Lus10007812 [exp]	9.2	0.8734
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	9.2	0.9064
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	10.2	0.9032
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	11.5	0.9031
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	13.0	0.8888
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10037649 [exp]	15.4	0.8229
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	19.8	0.8696

Compare expression of checked genes

Lus10025322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.