Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53720 419 / 4e-138 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 240 / 2e-70 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G17630 237 / 2e-69 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 236 / 4e-69 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 224 / 1e-64 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 206 / 6e-58 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT1G05580 194 / 6e-54 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 166 / 5e-44 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 149 / 4e-38 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G52080 146 / 3e-37 CHX28 cation/hydrogen exchanger 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024414 [exp] 677 / 0 AT3G53720 514 / 1e-175 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10028748 [exp] 230 / 5e-70 AT5G41610 517 / 1e-178 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10025322 [exp] 239 / 7e-70 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10030013 [exp] 237 / 6e-69 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 235 / 3e-68 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 233 / 3e-67 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017541 [exp] 228 / 5e-65 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 216 / 2e-61 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10004932 [exp] 182 / 2e-49 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054700 [exp] 465 / 7e-156 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.010G004800 [exp] 240 / 2e-70 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 240 / 3e-70 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 232 / 2e-67 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 230 / 1e-66 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 229 / 1e-66 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 222 / 6e-64 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.004G131300 [exp] 175 / 6e-47 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 174 / 9e-47 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.009G059400 [exp] 160 / 7e-42 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025324 pacid=23157310 polypeptide=Lus10025324 locus=Lus10025324.g ID=Lus10025324.BGIv1.0 annot-version=v1.0 ATGCTTGCATGCGTGCACGGCCCCGGAAACGTCCCTTCCATAATTACCCTCGTCGAATCAATTCGCAGCACCAAAATCTCCCAACTCAAACTCTTCGTCA TGCACCTTGTCGAGATGACCGACCGATCTTCATCCATCATCATGGTCCAACGGGCCCGCAAAAACGGCTTCCCTTTCTTCAATCGACGCCGCGCGGGCCA GTGGCACGACAGGCTTTCCGGAGCATTCCAAGCCTACAGCCAGTTGGGCCGAGTCACTGTCCGGCCCACTACCGCGATTTCGCCCCTGTCGACCTTGCAC GAGGATGTCTGCCACGTGGCGGAGACGAAACGTGTGGCCATGATCATCCTTCCGTTTCATAAGCACTGGAGCGACGAAGCGATTGAGAATGTTGGGCATG GGTGGAGGGGAGTCAACCAGAGGGTTCTGAAGCACGCGCCATGTTCGGTTGGTCTGCTTGTTGACCGTGGACTGGGCCAGGATACTAGGTCCAATTCTAA AGCGGGCCGGAAGATTTGTATTGTGTTTTTTGGCGGGCCGGACGATCGTGAGGCGCTAGAGTTGGGCGGAAGGATGGCCGAACATCCGGCAGTTAAAGTA ACGGTCGTTAGGTTCGTTGAAAAGGAAGGGGTGGAGGAAAATGGAAAGGCCGTGACTTTACAGCCGTCGCGATCTAAGTCGTCAGAGCAGAATTACAGCT TCTCTACTGCCGTTATGAACCGTGAGAAGGAACAGGCAAATGAGACGGCCGTGGCCGCGCTACGCATCAAATGGGGGGAGGATGTGGAGTACATAGAGAT GCCAGCGAGCAAAAACATTATAGAAGGGGTGTTGTCGATGGGGAAGAGCAGAGATTACGATCTTATGGTGGTCGGAAAGGGGCTGTTCCCATCGACAATG GTGGCGAAAATAGCGGACCAACAGGCGGAGCATGCAGAGTTGGGGCCCATTGGCGACGTGCTAGCATCCTCCAGGCACGGCGTAATTTCGTCCGTGCTTG TAATTCAGCAACATGATGTGGCCCATGTGGAGGAAGTTCCTGTAGTTAAAGTTATTGAGAATGGTGGGGCCACATCATCATTTGAGAGAGAGATGGGAAA TGGTATTGTGACGGATTACTTGTATGGGCCAACACCTCTGTGCGTCGAACCCGAGCCGGTCAATGGAGAACTACTTTGGGGCGAGCGCAACCAATATCGA GTCGGTGAAATTTTTGACAATGAGAGGAACGAGCACGCATGGGAGATGAGGGTGGATCAGTACGTGGCAGTGAGTGATTATCTCGACGATCGGAGATGTG GTACTTCTACAACGAGTACATGGTGTGGTACCGTCAGTACACTCGTCGGTGGACTTCGAGACAGTACAACAGTCCATCGTATGTACTCTAGCACCCCTAA AATTAATAGAGGCATGGAGCGTAGGCTAGATGACCCGGTGCATCACCCACAGATGCCCCCCACTAGACAGATCTACACGGCTTACGACCCGTACGCCACT AAGCCACTAAGCCAGGAGGCTATGTCCCCTATTAGACGTTCAAAGCGCTAG
AA sequence Show only first row Show all	>Lus10025324 pacid=23157310 polypeptide=Lus10025324 locus=Lus10025324.g ID=Lus10025324.BGIv1.0 annot-version=v1.0 MLACVHGPGNVPSIITLVESIRSTKISQLKLFVMHLVEMTDRSSSIIMVQRARKNGFPFFNRRRAGQWHDRLSGAFQAYSQLGRVTVRPTTAISPLSTLH EDVCHVAETKRVAMIILPFHKHWSDEAIENVGHGWRGVNQRVLKHAPCSVGLLVDRGLGQDTRSNSKAGRKICIVFFGGPDDREALELGGRMAEHPAVKV TVVRFVEKEGVEENGKAVTLQPSRSKSSEQNYSFSTAVMNREKEQANETAVAALRIKWGEDVEYIEMPASKNIIEGVLSMGKSRDYDLMVVGKGLFPSTM VAKIADQQAEHAELGPIGDVLASSRHGVISSVLVIQQHDVAHVEEVPVVKVIENGGATSSFEREMGNGIVTDYLYGPTPLCVEPEPVNGELLWGERNQYR VGEIFDNERNEHAWEMRVDQYVAVSDYLDDRRCGTSTTSTWCGTVSTLVGGLRDSTTVHRMYSSTPKINRGMERRLDDPVHHPQMPPTRQIYTAYDPYAT KPLSQEAMSPIRRSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025324 [exp]	0	1
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	1.0	0.9580
					Lus10018015 [exp]	4.2	0.8702
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	5.3	0.8909
AT3G02360			6-phosphogluconate dehydrogena...		Lus10003043 [exp]	8.1	0.8833
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	8.7	0.8745
AT1G18980			RmlC-like cupins superfamily p...		Lus10036658 [exp]	9.5	0.8714
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041613 [exp]	13.0	0.7813
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	13.5	0.8628
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	16.7	0.8623
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10033524 [exp]	16.7	0.8573

Compare expression of checked genes

Lus10025324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.