Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53720 323 / 1e-105 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT5G41610 265 / 2e-84 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 253 / 2e-79 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 235 / 1e-72 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 234 / 2e-72 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT2G13620 214 / 6e-65 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G31910 125 / 5e-33 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G05580 117 / 2e-30 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G58460 102 / 6e-25 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1) AT5G37060 96 / 2e-22 ATCHX24 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025322 [exp] 304 / 1e-98 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017541 [exp] 262 / 2e-81 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10017540 [exp] 260 / 2e-81 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 254 / 1e-79 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10035312 [exp] 219 / 3e-66 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 217 / 1e-65 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024717 [exp] 159 / 8e-46 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10039138 [exp] 109 / 3e-27 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 106 / 3e-26 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054700 [exp] 335 / 3e-110 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.003G134900 [exp] 260 / 6e-82 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 251 / 7e-79 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 250 / 3e-78 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 248 / 3e-77 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 246 / 9e-77 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 207 / 5e-62 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 130 / 9e-35 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.019G123700 [exp] 125 / 4e-33 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 118 / 2e-30 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10025325 pacid=23157385 polypeptide=Lus10025325 locus=Lus10025325.g ID=Lus10025325.BGIv1.0 annot-version=v1.0 ATGAAGTGGGTGGCGGGTCGGTGCTCGCCCGAACACGACGTCGTTGACGAGGCCTATATATGTTTGACCTTAGCCGGGGTGATGGTTTCCGGGTTTCTGA CGGACCTGATCGGGATCCATTCGATATTCGGGGCGTTTGTGTTCGGGTTGACGATACCGAAAGGCGGGGCGTTTGCGGAGCGGTTGATTGAGCGGATCGA GGACTTTGTTTCGGGTCTTTTGTTGCCGCTTTATTTTGCATCCAGTGGGCTCAAGACAGACGTGGCGACCATTCGGGGAGGGAGGTCGTGGGGCCTACTG GCGCTTGTTATCACCACCGCCTGCGCCGGGAAAATATTGGGGACGTTCGCGGTGGCGTTGATGTTCTTGATTCCGGCGAGGGAGGCGCTGACTTTGGGGT TGTTGATGAACACCAAAGGCTTGGTTGAGCTCATTGTTCTCAACATTGGCAAGGAGAAAAAGGTCCTTAATGATGAGACATTTGCCATTCTAGTCCTCAT GGCACTTTTCACAACCTTCATCACCACTCCATCAGTGATGCTCATCTACAAACCAGCCCGCCTCGGCACCCCCCCCCCCCGGGCCGGGGCGGCAGCAGCC GCGGAGAAGGCGGCACCACCACCTCCTCCAATTCAGGCAGCCCCCGGCGAAAGCTCGGTGACTTAA
AA sequence Show only first row Show all	>Lus10025325 pacid=23157385 polypeptide=Lus10025325 locus=Lus10025325.g ID=Lus10025325.BGIv1.0 annot-version=v1.0 MKWVAGRCSPEHDVVDEAYICLTLAGVMVSGFLTDLIGIHSIFGAFVFGLTIPKGGAFAERLIERIEDFVSGLLLPLYFASSGLKTDVATIRGGRSWGLL ALVITTACAGKILGTFAVALMFLIPAREALTLGLLMNTKGLVELIVLNIGKEKKVLNDETFAILVLMALFTTFITTPSVMLIYKPARLGTPPPRAGAAAA AEKAAPPPPPIQAAPGESSVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025325 [exp]	0	1
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	4.2	0.9369
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019029 [exp]	4.7	0.9320
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10028888 [exp]	7.4	0.9142
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	7.5	0.9177
AT1G08170			Histone superfamily protein (....		Lus10041351 [exp]	7.7	0.9200
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	15.4	0.9055
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	15.6	0.8969
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10005189 [exp]	16.7	0.8843
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10024414 [exp]	17.0	0.8588
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10035011 [exp]	20.9	0.9103

Compare expression of checked genes

Lus10025325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.