Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59950 201 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein AT5G02530 179 / 2e-55 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 122 / 2e-33 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT1G66260 118 / 1e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G10400 58 / 1e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT2G36660 55 / 1e-08 PAB7 poly(A) binding protein 7 (.1) AT1G71770 53 / 9e-08 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT5G44200 51 / 2e-07 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G08000 49 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 50 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024413 [exp] 322 / 9e-112 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005445 [exp] 202 / 9e-65 AT5G59950 210 / 9e-68 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10004946 [exp] 202 / 1e-64 AT5G59950 209 / 3e-67 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10005895 [exp] 189 / 1e-59 AT5G02530 185 / 8e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000446 [exp] 139 / 1e-39 AT5G37720 211 / 1e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10010982 [exp] 139 / 2e-39 AT5G37720 209 / 7e-66 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Lus10023417 [exp] 118 / 5e-32 AT5G59950 130 / 3e-37 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040851 [exp] 100 / 3e-24 AT5G02530 199 / 2e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10040299 [exp] 63 / 2e-11 AT5G59950 77 / 1e-16 RNA-binding (RRM/RBD/RNP motifs) family protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093944 [exp] 233 / 3e-77 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G236900 [exp] 200 / 3e-64 AT5G59950 187 / 2e-59 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.017G129900 [exp] 143 / 2e-41 AT1G66260 216 / 3e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G087000 [exp] 140 / 1e-40 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.010G208000 [exp] 130 / 8e-37 AT5G59950 138 / 8e-40 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.008G052601 [exp] 102 / 5e-27 AT5G02530 97 / 2e-24 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G227500 [exp] 60 / 2e-10 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.014G157300 [exp] 54 / 3e-09 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G137200 [exp] 56 / 6e-09 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.004G177000 [exp] 56 / 6e-09 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10025329 pacid=23157434 polypeptide=Lus10025329 locus=Lus10025329.g ID=Lus10025329.BGIv1.0 annot-version=v1.0 ATGTCGACCGCCCTGGACATGTCTCTCGAAGATATCATAAAGGCCAACAAGAAGTCCAAGACCTCTTCTTCTTCTTCTAGAGGCAAACCTCCTCGCTCCG CCGGCCCTGGCCCTAGCCGCCGTGGCCCCTCTAATCGCGCCGCCAACAGATCCGCTCCCTATTCCAAGCCGCCTCAAGCTCCAGAATCCGCCTGGCAACA TGACAAGTTCTCTGACGCTTCTGGCGCTGTAGCCTCTGGCCGATACTCCCGCGCCGGAGCCCTCGAGACTGGGACTAAGATCTATATCTCCAACTTGGAT TATGGAGTTTCCGAAGATGATATCAAGGAGCTTTTCTCAGAAGTCGGTGACATGAAGCGATACACGGTTCATTACGATAGGAGTGGGAGATCAGAGGGAA CTGCTGAAATTGTATTTGCACGCCGAGAAGATGCTATTGCGGCTGTCAAGAGGTATAATAATGTACAACTTGATGGGAAGCCAATGAAGATTGAGATGGT TGCAAAGAATGTTGCTGCTGCTCCTGCTCCTGCTCCATCGGCAGACGGCTTCAATCGCAATCAGAATGGTGGCGGCAGAAGGCAAGGAAGGGGCCGCTCT ACTGGAGGGTCACGTGGCGGGGGCGGCGGCGGTCGTGAAGGTAGGGGTGGTAAGGGACGAGGTAGAGGCCGAGCTGAGAAGGAGAAGGTGTCGGCGGAGG ATCTTGATGCCGATTTGGACAAGTACCACTCGGGAGCGATGCAAGAAGACTAG
AA sequence Show only first row Show all	>Lus10025329 pacid=23157434 polypeptide=Lus10025329 locus=Lus10025329.g ID=Lus10025329.BGIv1.0 annot-version=v1.0 MSTALDMSLEDIIKANKKSKTSSSSSRGKPPRSAGPGPSRRGPSNRAANRSAPYSKPPQAPESAWQHDKFSDASGAVASGRYSRAGALETGTKIYISNLD YGVSEDDIKELFSEVGDMKRYTVHYDRSGRSEGTAEIVFARREDAIAAVKRYNNVQLDGKPMKIEMVAKNVAAAPAPAPSADGFNRNQNGGGRRQGRGRS TGGSRGGGGGGREGRGGKGRGRGRAEKEKVSAEDLDADLDKYHSGAMQED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59950			RNA-binding (RRM/RBD/RNP motif...		Lus10025329 [exp]	0	1
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	2.4	0.9216
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	4.5	0.9117
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	5.7	0.9002
AT5G41920	GRAS		GRAS family transcription fact...		Lus10010462 [exp]	6.5	0.8710
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10025607 [exp]	8.1	0.8418
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Lus10014971 [exp]	8.5	0.8988
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	11.7	0.8941
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	12.6	0.8825
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10037244 [exp]	13.7	0.8855
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	14.5	0.8932

Compare expression of checked genes

Lus10025329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.