Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37560 460 / 2e-162 ATORC2 origin recognition complex second largest subunit 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024412 [exp] 608 / 0 AT2G37560 462 / 3e-164 origin recognition complex second largest subunit 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094800 [exp] 531 / 0 AT2G37560 537 / 0.0 origin recognition complex second largest subunit 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04084 [flax] [poplar] ORC2 Origin recognition complex subunit 2
Representative CDS sequence Show only first row Show all	>Lus10025330 pacid=23157396 polypeptide=Lus10025330 locus=Lus10025330.g ID=Lus10025330.BGIv1.0 annot-version=v1.0 ATGGATATAACCGACGGCGAAGAAGAAGAGGAGGAGCTCGAGTTCTCAAGGAATTACTTTCTCTCGAAAGAGCTTAGCGGCTCTAGTAAAAAATCCAGCC GCAAGATCTCCGATATTGATCCAGTAGACGAGCAGGAGCTAAGAACGGCCACCGCCAACATTAAACCAAAACATGAAAGGGAGATCGCTTCACTTATGGA GAGCTACAAGAAATCGTACCCTGAGTGGGTTTTTATGCTCAGGAGTGGATTTGGACTTCTAATGTATGGATTTGGTTCTAAGAAGGAACTGATTGAAGAT TTCGCTTCCACATCATTGACTGAGTATTCCGTTGTTGTCATCAATGGATACGTTCAATCAATCAATCTCAAGCAGGTTATGATAGCATTAGCTGAAGTTT GGTGGGAACAACTCAAGGCTAAGAGAAGGCACTCCTCCTCGTCCAAGGTTCACCAGCCGTTTAATTCTCGATCGGTGGATGATATTCTCTCGTTTTTGGA TGGACAAGAGGGAGATGATGATGAAAGTTCCTTTGTTTGTGTCATTGTTCACAACATTGATGGTCCCGGGTTAAGAGAACCTGACTGCCAGCAGCTTCTT GCACGGATCGCTTCGTGTTCGCATATCCGCGTGCTTGCCTCTATCGACCATGTCAATTCTCCACTCCTATGGGACAAGAAGATGGTCCACACGCAGTTTA ACTGGTACTGGTATCATGTTCCTACGTTCGCACCGTATACAGTTGAAGGAATGTTCTTCCCACTGATACTTGCACACAGCAGCACAGCCCAAAGCACCAA GACTGCTGCAATAGTGTTGCAGAGTTTGACTCCCAATGCCCAGAGTGTGTTTAGAGTACTTGCAGAGTATCAGCTTTCTCATCCCGACGAAGAAGGCAAG TTAACTTGTATCCTTCAAATCTTGTTGATGACAAGTCTGACTAAATTTCTCACCCTTTCCTTCCCTTTCCTTTCAGGAATGGCAATAGATAATTTGTATG CAGCCTCAAGAGAGCAGTTCTTTGTTTCTAGTCAGGTGACTTTGAACTCTCATTTGACGGAGTTCAAAGATCACGAGTTGATTAAGATGAGAAGGAATGG TGATGGTCAAGATTGCGTCTATATTCCTCTTGCCCGTGACGGATTGCAAAAATTGCTCGAGGAGATCAATCCATAG
AA sequence Show only first row Show all	>Lus10025330 pacid=23157396 polypeptide=Lus10025330 locus=Lus10025330.g ID=Lus10025330.BGIv1.0 annot-version=v1.0 MDITDGEEEEEELEFSRNYFLSKELSGSSKKSSRKISDIDPVDEQELRTATANIKPKHEREIASLMESYKKSYPEWVFMLRSGFGLLMYGFGSKKELIED FASTSLTEYSVVVINGYVQSINLKQVMIALAEVWWEQLKAKRRHSSSSKVHQPFNSRSVDDILSFLDGQEGDDDESSFVCVIVHNIDGPGLREPDCQQLL ARIASCSHIRVLASIDHVNSPLLWDKKMVHTQFNWYWYHVPTFAPYTVEGMFFPLILAHSSTAQSTKTAAIVLQSLTPNAQSVFRVLAEYQLSHPDEEGK LTCILQILLMTSLTKFLTLSFPFLSGMAIDNLYAASREQFFVSSQVTLNSHLTEFKDHELIKMRRNGDGQDCVYIPLARDGLQKLLEEINP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	0	1
AT5G08305			Pentatricopeptide repeat (PPR)...		Lus10017386 [exp]	2.2	0.8088
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	5.5	0.7957
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	8.4	0.7948
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	11.5	0.8007
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10012994 [exp]	15.0	0.7796
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10033481 [exp]	17.9	0.7100
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	22.0	0.7955
AT5G09995			unknown protein		Lus10016816 [exp]	24.1	0.8049
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10024376 [exp]	25.3	0.7528
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10011323 [exp]	26.1	0.7699

Compare expression of checked genes

Lus10025330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.