Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37830 2189 / 0 OXP1 oxoprolinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024411 [exp] 2504 / 0 AT5G37830 2214 / 0.0 oxoprolinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G091000 [exp] 2248 / 0 AT5G37830 2153 / 0.0 oxoprolinase 1 (.1) Potri.017G124400 [exp] 447 / 2e-147 AT5G37830 414 / 2e-135 oxoprolinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF05378 [flax] [poplar] Hydant_A_N Hydantoinase/oxoprolinase N-terminal region CL0108 [flax] [poplar] Actin_ATPase PF01968 [flax] [poplar] Hydantoinase_A Hydantoinase/oxoprolinase CL0108 [flax] [poplar] PF02538 [flax] [poplar] Hydantoinase_B Hydantoinase B/oxoprolinase
Representative CDS sequence Show only first row Show all	>Lus10025331 pacid=23157417 polypeptide=Lus10025331 locus=Lus10025331.g ID=Lus10025331.BGIv1.0 annot-version=v1.0 ATGGGGCGTGTCAATGAAGAGAAGCTCAGGTTTTGCATCGACAGAGGAGGCACGTTTACAGATGTCTATGCCGAAATCCCTGGCAAAACTGACGGCCGAG TTCTGAAACTTCTGTCCGTCGACCCTGCAAACTACGATGATGCTCCGGTGGAAGGAATCCGCAGGATTCTTGAAGACTACACTGGCTCAAAGATCCCTCG CCATACTAAAATCCCTACGGATAAGATAGAGTGGATCAGGATGGGTACAACAGTGGCAACCAATGCATTGTTGGAGAGAAAGGGCGAAAGGATTGCTCTC TGTGTCACCAAGGGTTTCAAGGATCTGCTACAGATCGGCAACCAGGCTCGTCCCAGTATCTTCGACCTTACTGTATCGAAACCTTCGAATCTGTATGAGG AGGTTATCGAAGTTGATGAGAGAGTTCAGCTTGTTATTGATATGGAGGACACGTCATCGGCATCAGTTGTTAAAGGAGTTTCGGGCGAGTTTGTCAGGGT TGTGAAACCACTTGACGAATCAGCCTTGGAGCCTCTATTGAAACCTTTGCTTGAGAAAGGGATAAGCTGTTTGGCTGTAGTTTTGCTGCATTCTTATACT TTCCCTGAACACGAGCTACTTCTCTCTAAGGTAGCTTTAAGCATGGGTTTCAAACACGTTTCTTTGTCGTCGGCTTTGACCCCAATGGTTCGAGCTGTTC CTCGTGGTCTAACAGCAAGTGTTGATGCCTACTTAACCCCAGTTATTAAAGAGTACTTGTCAGGGTTTATATCGAAATTCGATGAAGGCTTGGGAAAAGT GAATGTGTTATTTATGCAATCAGATGGAGGACTTGCACCAGAAAGTAGATTCTCTGGGCACAAAGCTGTTTTGTCTGGTCCAGCTGGTGGAGTTGTTGGT TACTCCCAAACCCTTTTCGGACTTGAAACTGAGAAGCCTCTCATTGGCTTTGACATGGGAGGTACGTCAACTGATGTTAGCCGTTATGCTGGGAGTTACG AACAAGTTCTCGAAACTCAGATTGCCGGTGCTATTATACAGGCGCCTCAGCTAGATATCAACACTGTTGCTGCTGGTGGAGGATCCAAGTTAAAGTTCCA ATTTGGAGCGTTCAAGGTAGGACCGGAATCTGTTGGTGCACATCCAGGTCCGGTTTGCTACCGAAAAGGCGGAGAATTGGCAGTAACTGATGCCAATCTC ATTCTAGGATATGTGATTCCTGATTATTTTCCTGCCATCTTTGGCCCCAGTGAAGATCAACCGTTAGATATCGAAGCAACAAGAAAACAATTCGGGGATC TTGCTGGACAGATAAACTCATACAGAAAGAGCCAGGATTCAAATGCAAAAGATATGTCAGTAGAAGAGATTGCTCTAGGCTTTATCAATGTTGCAAATGA GACCATGTGTCGCCCGATAAGACAGTTGACCGAGATGAAGGGGCATGAGACGAGGAATCATGCTCTGGCATGCTTTGGAGGTGCTGGCCCCCAACATGCT TGCGCCATTGCTAGATCTCTGGGAATGAAAGAAGTGCTGGTTCATAGATTTTGTGGGATACTAAGTGCTTACGGCATGGGATTAGCAGATGTCGTCGAGG AGGCTCAAGAGCCATACTCTGCTGTATATGGACAGGACTCCATCTCGGAGGCTTCCCGCAGAGAAAGTATGTTACAAAAGCAGATAAAAGATAAACTGCA GGAGCAAGGTTTCAAAGAGGAAACTATAACAACGGAAACCTATTTGAATTTAAGGTATGAAGGTACTGATACAGCCATAATGGTGAAGAGAAATGTACAC GAAGATGGATCCGTAAATGAATATGATGCTGAATTTGTGAAGATGTTCCAGCAAGAGTATGGATTCAAGTTACAGAACCGGAACATTCTAGTTTGCGACG TAAGGGTTCGTGGTATTGGAGTTACGAACATACTAAAGCCACGAGTCGAAGAACCTGCTTCCGGTACACCGAAAATCGAAGGTCAATACCGGGTTTACTT TGGAGAAGGATGGCACCAGACACCTCTTTTCAGGCTCGAGAATCTGGGTTCCGGACATTCGATCCCCGGCCCTGCAATCATCATGAACGGAAACAGCACG GTGATAGTCGAGCCGAAATGCAAAGCGATCATTACAAAATATGGAAACATCAGGATAGAAATCGAGTCCGGTACGGAAACTATAAAAATCGCTGAGAAAG TTGCAGATGTTGTTCAGCTTTCAATTTTCAATCACAGGTTTATGGGGATAGCCGAGCAGATGGGACGGACATTGCAAAGAACGTCGATCTCGACAAACAT AAAGGAACGATTAGATTTCTCTTGCGCTCTATTCGGTCCAGACGGCGGTCTGGTTGCTAACGCCCCTCACGTCCCGGTACATCTCGGAGCTATGTCCAGC ACGGTCCGGTGGCAGCTGAATCACTGGGGTAACAACTTGAGCGAAGGTGATGTATTAGTCACGAATCATCCTTGCGCCGGAGGTAGCCATCTCCCCGACA TTACAGTTATAACTCCGGTTTTCGATAAAGGGAAGCTCTTCTTCTTCGTGGCGAGCAGAGGCCACCACGCCGAAATTGGAGGTATTACTCCCGGTAGCAT GCCGCCTTTTTCGAAATCAATATGGGAAGAAGGGGCGGCCATTAAAGCGTTTAAGCTCGTGGAAAAGGGAGTTTTCCAAGAAGACGGGATAGTCAAGCTT CTTCAGTTCCCTGGTTCTGATGATTCGGTTCATAAAATCCCCGGAACGAGACGCCTTCAAGATAATCTCTCCGATCTACGTGCACAGATAGCTGCGAATC AGAGAGGAATTATCCTAATCAAAGAGCTGATCGAGCAATACGGGTTGGAGACTGTTCAGGCTTACATGACTTATGTTCAACTGAATGCTGAAGAAGTCGT TAGAGAAATGCTCAAGACCATGGCTGCAAAGGTCTCATCATCCAGTCCGGACAACAACAAAAACTCGATCGTGACCATCGAAGAAGAAGATTTCATGGAC GACGGCTCCACAATACATCTGAAGCTTGAAATCGACGGGGAAAAAGGCGAAGCATCGTTTGACTTCAGCGGGACGAGTCCGGAAGTGTACGGAAACTGGA ACGCACCGGAAGCCGTAACGGCAGCAGCAGTCATCTACTGCCTACGCTGCTTGGTCAACGTGGACATCCCTCTGAACCAGGGGTGCTTAGCTCCGGTCAA AATCCACATCCCACCGGGATCGTTCCTCTCCCCGAGCGACAAAGCAGCCGTCGTGGGAGGCAACGTGCTGACGTCACAACGAGTGACAGATGTCGTTCTC ACAGCGTTCCAGGCGTGCGCTTGCTCTCAGGGGTGTATGAACAACCTCACGTTCGGGGACGAAACATTCGGCTACTACGAAACGATCGGAGGCGGAAGTG GTGCCGGACCGACGTGGGAAGGGACGAGCGGGGTGCAGTGTCATATGACCAACACTCGGATGACCGATCCTGAGATTTTCGAGCAGAGGTATCCTGTTGT GCTGCACAGGTTCGGGATGAGAGAGAAGAGTGGTGGGGTGGGAGTTCATAGGGGAGGAGATGGGATTGTGAGGGAGATTGAGTTTAGGAGGCCGGTTGTG GTGAGTATTCTTTCCGAGAGGCGAGTTCATTCTCCGAGAGGTTTGGCTGGTGGAAAGGATGGATCTCGCGGAGCGAATTATTTGATCAGTAAAGATGGAA GGAGGATTAATTTGGGAGGTAAGAACACTGTTGAGGTTGAAGCTGGTGAGATTCTGCAGATACTAACGCCTGGTGGTGGTGGATGGGGTTCTCCTTGA
AA sequence Show only first row Show all	>Lus10025331 pacid=23157417 polypeptide=Lus10025331 locus=Lus10025331.g ID=Lus10025331.BGIv1.0 annot-version=v1.0 MGRVNEEKLRFCIDRGGTFTDVYAEIPGKTDGRVLKLLSVDPANYDDAPVEGIRRILEDYTGSKIPRHTKIPTDKIEWIRMGTTVATNALLERKGERIAL CVTKGFKDLLQIGNQARPSIFDLTVSKPSNLYEEVIEVDERVQLVIDMEDTSSASVVKGVSGEFVRVVKPLDESALEPLLKPLLEKGISCLAVVLLHSYT FPEHELLLSKVALSMGFKHVSLSSALTPMVRAVPRGLTASVDAYLTPVIKEYLSGFISKFDEGLGKVNVLFMQSDGGLAPESRFSGHKAVLSGPAGGVVG YSQTLFGLETEKPLIGFDMGGTSTDVSRYAGSYEQVLETQIAGAIIQAPQLDINTVAAGGGSKLKFQFGAFKVGPESVGAHPGPVCYRKGGELAVTDANL ILGYVIPDYFPAIFGPSEDQPLDIEATRKQFGDLAGQINSYRKSQDSNAKDMSVEEIALGFINVANETMCRPIRQLTEMKGHETRNHALACFGGAGPQHA CAIARSLGMKEVLVHRFCGILSAYGMGLADVVEEAQEPYSAVYGQDSISEASRRESMLQKQIKDKLQEQGFKEETITTETYLNLRYEGTDTAIMVKRNVH EDGSVNEYDAEFVKMFQQEYGFKLQNRNILVCDVRVRGIGVTNILKPRVEEPASGTPKIEGQYRVYFGEGWHQTPLFRLENLGSGHSIPGPAIIMNGNST VIVEPKCKAIITKYGNIRIEIESGTETIKIAEKVADVVQLSIFNHRFMGIAEQMGRTLQRTSISTNIKERLDFSCALFGPDGGLVANAPHVPVHLGAMSS TVRWQLNHWGNNLSEGDVLVTNHPCAGGSHLPDITVITPVFDKGKLFFFVASRGHHAEIGGITPGSMPPFSKSIWEEGAAIKAFKLVEKGVFQEDGIVKL LQFPGSDDSVHKIPGTRRLQDNLSDLRAQIAANQRGIILIKELIEQYGLETVQAYMTYVQLNAEEVVREMLKTMAAKVSSSSPDNNKNSIVTIEEEDFMD DGSTIHLKLEIDGEKGEASFDFSGTSPEVYGNWNAPEAVTAAAVIYCLRCLVNVDIPLNQGCLAPVKIHIPPGSFLSPSDKAAVVGGNVLTSQRVTDVVL TAFQACACSQGCMNNLTFGDETFGYYETIGGGSGAGPTWEGTSGVQCHMTNTRMTDPEIFEQRYPVVLHRFGMREKSGGVGVHRGGDGIVREIEFRRPVV VSILSERRVHSPRGLAGGKDGSRGANYLISKDGRRINLGGKNTVEVEAGEILQILTPGGGGWGSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37830		OXP1	oxoprolinase 1 (.1)		Lus10025331 [exp]	0	1
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10042094 [exp]	5.3	0.8738
					Lus10005528 [exp]	5.3	0.8626
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	11.8	0.8605
AT4G19006			Proteasome component (PCI) dom...		Lus10010423 [exp]	14.4	0.8334
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	15.1	0.7778
AT3G01160			unknown protein		Lus10028412 [exp]	20.0	0.7812
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	23.1	0.8195
AT2G25320			TRAF-like family protein (.1)		Lus10002926 [exp]	23.9	0.8386
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	24.8	0.8362
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	25.7	0.8035

Compare expression of checked genes

Lus10025331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.