Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02510 150 / 4e-45 unknown protein AT5G32440 132 / 3e-37 Ubiquitin system component Cue protein (.1.2.3) AT1G80040 116 / 2e-31 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024410 [exp] 518 / 0 AT5G02510 149 / 8e-45 unknown protein Lus10039988 [exp] 152 / 6e-45 AT5G32440 272 / 1e-91 Ubiquitin system component Cue protein (.1.2.3) Lus10027700 [exp] 144 / 3e-41 AT5G32440 262 / 2e-87 Ubiquitin system component Cue protein (.1.2.3) Lus10039987 [exp] 141 / 3e-40 AT5G32440 255 / 1e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10027699 [exp] 137 / 1e-38 AT5G32440 253 / 8e-84 Ubiquitin system component Cue protein (.1.2.3) Lus10026000 [exp] 101 / 1e-25 AT1G80040 121 / 1e-33 unknown protein Lus10014293 [exp] 97 / 4e-24 AT1G80040 129 / 1e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127200 [exp] 160 / 9e-48 AT5G32440 287 / 1e-97 Ubiquitin system component Cue protein (.1.2.3) Potri.006G066000 [exp] 157 / 1e-46 AT5G32440 241 / 3e-79 Ubiquitin system component Cue protein (.1.2.3) Potri.005G121100 [exp] 103 / 8e-27 AT1G80040 130 / 2e-37 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF02845 [flax] [poplar] CUE CUE domain
Representative CDS sequence Show only first row Show all	>Lus10025332 pacid=23157341 polypeptide=Lus10025332 locus=Lus10025332.g ID=Lus10025332.BGIv1.0 annot-version=v1.0 ATGTCGGCTGGGATTTGCGGCAAGCGGATGGGTTTCGAGGAGATATTCGGATCTCCCTCTTCTTATTCCGCTAAGAGATCCAGGTGTTCCGCATTCGGAT CTCCTACCCGATCGCCCGAATCCGGATCCGATGACAAGGTTCTCACCTTGCTCCAGATGTTTCCTGGTTTAGATCCTGAGTGTATCAAAAGAGCGCTCTG GGAGAACAATAACAAGATTGACGATGCAATCGAGAGCTTGCGGGGAAGTTCATTTCGTGACGCCATGGATAGAAACAACAGGGGCAGCATTGATGATCCT GCCATCATTGGGAACTGCGATGCTGTTCATTCTCCAAGTACATCTACTGGCATACTGAAGGGCGAACAAGTCATTGATGGATCCAAATGGGTGGATCTCT TTGTACACGAGATGACGACTTCGGTCGATCTAAATGACGCCAGGAGGCGAGCTGCGACGATCCTAGAAGTTTTCGAGAAGTCTATAGCTTCGTCTCAGTT GAGGGAATCGAAGGAGAAAGAGATGGAGAATGCAGCGCTTAGGAATCATCTGCAGGGTTTGGTTAGTGATAACCAAATCTTGAAGAGAGCCGTTGCGATC CAGCACGACCGTAACTTGGAGCAGGAAGAGAAAGCAAAGGAAGTGCACAACGTAAAGGTTGTGTTAAACCAGTATCAAGAGCAAATTCGAAGTTTGGAGC TAAGCAACTATGCTCTGAAGCTCCATTTACAAAGAGCACAACACAGTAGCAGCTCATTTCCAGGACACTTCCCTCCAGATATCTGTTGA
AA sequence Show only first row Show all	>Lus10025332 pacid=23157341 polypeptide=Lus10025332 locus=Lus10025332.g ID=Lus10025332.BGIv1.0 annot-version=v1.0 MSAGICGKRMGFEEIFGSPSSYSAKRSRCSAFGSPTRSPESGSDDKVLTLLQMFPGLDPECIKRALWENNNKIDDAIESLRGSSFRDAMDRNNRGSIDDP AIIGNCDAVHSPSTSTGILKGEQVIDGSKWVDLFVHEMTTSVDLNDARRRAATILEVFEKSIASSQLRESKEKEMENAALRNHLQGLVSDNQILKRAVAI QHDRNLEQEEKAKEVHNVKVVLNQYQEQIRSLELSNYALKLHLQRAQHSSSSFPGHFPPDIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02510			unknown protein		Lus10025332 [exp]	0	1
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Lus10001475 [exp]	2.2	0.8416
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Lus10032557 [exp]	7.2	0.8297
AT2G36970			UDP-Glycosyltransferase superf...		Lus10016127 [exp]	11.4	0.8240
AT5G06820		SRF2	STRUBBELIG-receptor family 2 (...		Lus10016276 [exp]	15.3	0.6844
AT3G45620			Transducin/WD40 repeat-like su...		Lus10033290 [exp]	17.9	0.8087
AT5G63380			AMP-dependent synthetase and l...		Lus10036994 [exp]	21.7	0.8085
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	26.7	0.7377
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	27.8	0.8096
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	28.5	0.7771
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	29.5	0.7389

Compare expression of checked genes

Lus10025332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.