Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 898 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 882 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 880 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 871 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 818 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 794 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 592 / 0 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 590 / 0 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 545 / 0 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G24280 396 / 6e-130 CPHSC70-1 chloroplast heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023418 [exp] 1021 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 1005 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 986 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10024407 [exp] 964 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 954 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 952 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 876 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 830 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10025354 [exp] 805 / 0 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G205700 [exp] 907 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 905 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 904 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 904 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 898 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 890 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 835 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 808 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 762 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 671 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10025336 pacid=23157360 polypeptide=Lus10025336 locus=Lus10025336.g ID=Lus10025336.BGIv1.0 annot-version=v1.0 ATGGCCGGTAAAGGAGAAGGTCCTGCTATCGGTATCGATCTCGGTACCACTTATTCTTGCGTCGGTGTCTGGCAGCATGATCGCGTTGAGATCATCGCCA ATGACCAGGGTAACCGTACTACCCCTTCTTACGTCGGATTCACTGATTCCGAGCGTTTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTAT CAACACTGTTTTCGTTCCTGCCTACTTCAACGATTCTCAGCGCCAGGCCACCAAGGATGCTGGTGTCATTGCTGGCCTTAACGTCATGCGTATTATCAAC GAGCCCACTGCTGCCGCCATCGCCTATGGACTTGACAAGAAGGCCACCAGCGTTGGAGAGAAGAACGTCTTGATCTTTGATCTTGGCGGTGGTACTTTTG ATGTCTCCCTCCTCACCATCGAAGAGGGTATCTTTGAGGTCAAGGCCACAGCTGGTGACACCCATCTTGGGGGCGAAGACTTTGACAACAGAATGGTGAA CCACTTCGTCCAAGAGTTCAAGAGGAAGCACAAAAAGGACATCTCTGGAAACCCCAGAGCCCTCAGAAGATTGAGGACATCTTGCGAGAGGGCCAAAAGA ACTCTCTCATCCACCGCCCAGACCACCATCGAAATTGATTCCTTGTACGAGGGTGTCGATTTCTACTCGACCATCACCCGTGCAAGGTTCGAGGAGCTCA ACATGGACCTTTTCCGGAAGTGCATGGAGCCAGTTGAGAAGTGTTTGAGAGATGCTAAGATGGACAAGAGCACGGTCCATGATGCAGTGCTTGTCGGTGG ATCCACCAGAATCCCCAAGGTCCAGCAATTGCTTCAGGACTTCTTCAATGGCAAGGAATTGTGCAAGAGCATTAACCCTGATGAGGCTGTTGCCTATGGT GCTGCTGTCCAAGCTGCCATCTTGAGTGGTGAGGGTAACGAGAAGGTTCAGGACCTTCTATTGCTCGATGTCACCCCTCTTCCCCTTGGTCTTAAAACGG CCGGAGGTGTGATGACTGTGTTGATCCCAAGGAACACTACTATCCCAACCAAGAAGGAACAAGTCTTCTCCACCTACTCAGACAACCAGCCAGGTGTCCT CATTCAGGTCTACGAAGGTGAAAGAACAAGGACAAGGGATAACAACTTGCTCGGCAAGTTCGAGCTCTCCGGTATTCCTCCTGCACCAAGGGGTGTCCCC CAGATCACCGTCTGCTTCGACATTGATGCCAATGGTATCCTGAACGTGTCAGCGGAGGATAAGACCACTGGACAGAAGAACAAGATCACCATCACCAACG ACAAGGGCAGGCTATCAAAGGAAGACATTGAGAAGATGGTTCAAGAGGCAGAGAAGTACAAATCCGAAGACGAGGAGCACAAGAAGAAGGTGGAGGCCAA GAATGCATTGGAGAACTACTCATACAACATGAGGAACACCATCAAGGACGAGAAGATCGGTGAGAAGCTACCTGCAGCAGACAAGAAGAAGATCGAAGAT GCTATCGAGGCTGCCATCCAGTGGTTGGATGCCAACCAGTTGGCAGAAGCTGATGAGTTTGAAGATAAGATGAAGGAGTTGGAGAGCCTGTGCAACCCAA TCATTGCGAAGATGTACCAGGGAGCTGGAGGTGAAGGAGCCCCCATGGATGATGATGATGTCCCTGCAAGTGCTAGCGGCGGTGCCGGTCCCAAGATCGA GGAGGTGGACTAA
AA sequence Show only first row Show all	>Lus10025336 pacid=23157360 polypeptide=Lus10025336 locus=Lus10025336.g ID=Lus10025336.BGIv1.0 annot-version=v1.0 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFVPAYFNDSQRQATKDAGVIAGLNVMRIIN EPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKR TLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDAVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG AAVQAAILSGEGNEKVQDLLLLDVTPLPLGLKTAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVP QITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYSYNMRNTIKDEKIGEKLPAADKKKIED AIEAAIQWLDANQLAEADEFEDKMKELESLCNPIIAKMYQGAGGEGAPMDDDDVPASASGGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025336 [exp]	0	1
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	1.0	0.9395
AT5G19130			GPI transamidase component fam...		Lus10032125 [exp]	3.0	0.9057
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	3.7	0.9061
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	4.9	0.8940
AT5G57460			unknown protein		Lus10007798 [exp]	5.3	0.8882
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	6.7	0.8862
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	6.9	0.8666
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10038765 [exp]	8.1	0.8898
AT3G08640			Protein of unknown function (D...		Lus10003242 [exp]	13.2	0.8912
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	16.4	0.8576

Compare expression of checked genes

Lus10025336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.