Plant FIBer expression Database

Lus10025337 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G37570 738 / 0 SLT1 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
AT5G02480 594 / 0 HSP20-like chaperones superfamily protein (.1)
AT3G12570 584 / 0 FYD FYD (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024406
[exp]
956 / 0 AT2G37570 786 / 0.0 sodium- and lithium-tolerant 1, HSP20-like chaperones superfamily protein (.1.2)
Lus10023420
[exp]
592 / 0 AT3G12570 730 / 0.0 FYD (.1.2.3.4)
Lus10040301
[exp]
573 / 0 AT3G12570 731 / 0.0 FYD (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G054100
[exp]
622 / 0 AT3G12570 721 / 0.0 FYD (.1.2.3.4)
Potri.010G206400
[exp]
622 / 0 AT3G12570 716 / 0.0 FYD (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10025337 pacid=23157438 polypeptide=Lus10025337 locus=Lus10025337.g ID=Lus10025337.BGIv1.0 annot-version=v1.0
ATGGAGAATCATCATCCTTCAACCCTCTTGTCCATGGATTCAAGTGCTTCTTCCTCTCACGATGAATTGGATTTGGAGATGAGTCGTCAAATTGTGCCTC
CTGATATCAACCTGCCTTTCTCCACAGAGCGTAGTCCTCCTCCTCCTCCACCACAGTTATGGAACTCAGACCCTTGTGATCTGCTAGATGTTGGACTTGC
TCCTCAAGTTTACGACACCGAGAGTTACCTTGCAGTTGTTCCTAAAGTCGGCCGGAAATGCGCCAAACGGCTCGACAGCATATGGGGTGCCTGGTTTTTT
TTCAGCTTCTACTTTAGGCCAGCGCTGAACGAGAAATCAAAGGCCAAGGTTGTCAGGGATAACAACGGAGTGTCTGGATTTGACAAGTCTGATCTCAAGC
TTGATGTTTTCATGGTGCAACACGACATGGAGAACATGTACATGTGGGTGTTCAAGGACAGGCCAGAGAATGCTCTCGGTAAGATGCAGTTGAGGAGTTA
CATGAACGGTCATTCTCGCCAAGGCGAGCGTCCTTTCCCCTTTTGTGCCGATATGGGCTTCGTTCGATCCCACCGGATGCAAAGGAAGCACTACAGAGGA
CTGTCGAATCCGCAATGTGTTCATGGTATTGAGGTGGTTCCCTCACCTAATCTCTCGTGTATCGATGAGGATGAGAGGAAGAGATGGACTGAACTGACCG
GACGGGATGTCAACTTCACCATCCCGCCCGAAGCCAGTGATTTTGGCTCGTGGAGAAACCTTCCCAATACGGATTTCGAGCTCGAGAGGCATCCTCCTGC
GTTGAAAAACAGTAACTCGACGAAGCTTCTCAATGGTCACAGCAATGGGGATTCGAAGAAGCTGCTGCAAGGAAATGGTCTGAATCTGTCGACTCAACCG
TCAAGCCATAGCAATGGTGGGGATGCAATGGATTTGTCACCGAGCAGCAAGCGGAGGAAGGACTTGTTTCCGCATGACGAGGAGTGTTATTTGTCTGTGA
ATCATCCTTCATCAGCCGAAATGAATGAGCTGCCATGGTTGAATGAGTTTGGCGGGGTGATGAAGAATGTCTGCGGAGGGCCTGTGACAGCTGCGAAAAC
GATATATGAAGACGAAGAAGGATACTTGATAATCATGACATTGCCATTTGTTGATCTGCACACTGTGAAGGTGTCATGGAGGAACACTTTGAGTCACGGG
ATAATAAAAGTGTCGTGTGTTAGCACATCGAGGATGCCATTGATCAAGAGGCTCGACCGGACGTTCAAGCTGTCGGATGCGGCGTCGGAGCATTGTCCGC
CTGGGGAGTTTGTGAGGGAGATTCCGCTGTCGACGAGAATCCCTGAAGATGCGAAACTGGAAGCCTACTACGACGGACCGGGGACAGTTCTGGAGATTCT
GGTGCCGAAACTCAGGGAAGGGCGGGAAGAGCATGAGGTGCGGATCTGCCTGAGGCCTCACCTTGGCGGGAATGATCTTATGTTGACCTGA
AA sequence
>Lus10025337 pacid=23157438 polypeptide=Lus10025337 locus=Lus10025337.g ID=Lus10025337.BGIv1.0 annot-version=v1.0
MENHHPSTLLSMDSSASSSHDELDLEMSRQIVPPDINLPFSTERSPPPPPPQLWNSDPCDLLDVGLAPQVYDTESYLAVVPKVGRKCAKRLDSIWGAWFF
FSFYFRPALNEKSKAKVVRDNNGVSGFDKSDLKLDVFMVQHDMENMYMWVFKDRPENALGKMQLRSYMNGHSRQGERPFPFCADMGFVRSHRMQRKHYRG
LSNPQCVHGIEVVPSPNLSCIDEDERKRWTELTGRDVNFTIPPEASDFGSWRNLPNTDFELERHPPALKNSNSTKLLNGHSNGDSKKLLQGNGLNLSTQP
SSHSNGGDAMDLSPSSKRRKDLFPHDEECYLSVNHPSSAEMNELPWLNEFGGVMKNVCGGPVTAAKTIYEDEEGYLIIMTLPFVDLHTVKVSWRNTLSHG
IIKVSCVSTSRMPLIKRLDRTFKLSDAASEHCPPGEFVREIPLSTRIPEDAKLEAYYDGPGTVLEILVPKLREGREEHEVRICLRPHLGGNDLMLT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37570 SLT1 sodium- and lithium-tolerant 1... Lus10025337
[exp]
0 1
AT4G27740 Yippee family putative zinc-bi... Lus10023244
[exp]
7.3 0.8900
AT2G36840 ACR10 ACT domain repeats 10, ACT-lik... Lus10023921
[exp]
8.5 0.9150
AT3G27870 ATPase E1-E2 type family prote... Lus10008777
[exp]
14.8 0.8658
AT5G44080 bZIP Basic-leucine zipper (bZIP) tr... Lus10028575
[exp]
17.7 0.8617
AT1G07530 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARAB... Lus10004968
[exp]
18.7 0.8360
AT5G58920 unknown protein Lus10040699
[exp]
21.2 0.8431
AT3G45310 Cysteine proteinases superfami... Lus10034895
[exp]
23.7 0.8793
AT4G31130 Protein of unknown function (D... Lus10014344
[exp]
24.7 0.8708
AT3G46600 GRAS GRAS family transcription fact... Lus10040789
[exp]
26.9 0.8318
AT1G44542 Cyclase family protein (.1) Lus10014091
[exp]
27.7 0.8706

Lus10025337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.