Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17905 92 / 8e-23 ATL4H RING/U-box superfamily protein (.1) AT5G05280 78 / 2e-18 RING/U-box superfamily protein (.1) AT5G17600 79 / 7e-18 RING/U-box superfamily protein (.1) AT3G03550 77 / 4e-17 RING/U-box superfamily protein (.1) AT5G66070 76 / 4e-17 RING/U-box superfamily protein (.1.2) AT1G72220 77 / 6e-17 RING/U-box superfamily protein (.1) AT2G27940 76 / 6e-17 RING/U-box superfamily protein (.1) AT1G04360 77 / 1e-16 RING/U-box superfamily protein (.1) AT5G43420 74 / 6e-16 RING/U-box superfamily protein (.1) AT2G25409 71 / 6e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024405 [exp] 271 / 2e-94 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10005954 [exp] 96 / 2e-23 AT3G04020 111 / 7e-28 unknown protein Lus10029456 [exp] 82 / 2e-20 AT5G10380 86 / 3e-21 RING/U-box superfamily protein (.1) Lus10020859 [exp] 78 / 1e-17 AT1G49230 230 / 3e-76 RING/U-box superfamily protein (.1) Lus10012745 [exp] 77 / 3e-17 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10033515 [exp] 76 / 8e-17 AT1G49230 224 / 6e-74 RING/U-box superfamily protein (.1) Lus10013618 [exp] 76 / 9e-17 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10028454 [exp] 74 / 1e-16 AT1G72200 85 / 3e-19 RING/U-box superfamily protein (.1) Lus10028406 [exp] 72 / 1e-15 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206200 [exp] 93 / 4e-24 AT5G17600 91 / 6e-22 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 93 / 7e-23 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 90 / 1e-21 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 86 / 1e-20 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 86 / 2e-20 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 80 / 3e-19 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 79 / 1e-18 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 81 / 4e-18 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 76 / 1e-17 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 78 / 3e-17 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025338 pacid=23157425 polypeptide=Lus10025338 locus=Lus10025338.g ID=Lus10025338.BGIv1.0 annot-version=v1.0 ATGGCCGGAGACGATGGCCACGGCGGCGGGCCGGACGTCAGCCCTCTGATGATCGGAATCCTCGGGATGCTTGCCGGAGCCATAGCCGTGGCGACCTACC ACTGCATTGCCGTCGGCTGCTACCAAATGCACTCCCCCGATCCCCCGAGGGCAGACGAGAGGGGGAATAATGCTGCGTCGACGACGGAGAGAAGCCAGGA AGTGAGCAGCGGGAGCAGCATGAGCACGAGCAATTCGTCGGGGGCGTTGATTCCGGTGGTGAGGTACAGCAAGGAGCGGAGGAGCGAGGCCACGTGTCCG GTTTGCCTGTCGGATTTCAACGAAGGGGAGCCAGTTCGGTCGCTGCCCGCTTGTTCGCATCTGTTCCACGTGGCGTGCATAGACAGGTGGCTTCAATGTC ACTCCAATTGCCCCGTTTGCAGGGCAAATGCGGTGCCGGTTGCCCATGTGGCGCTGACTGTGCCCGATATGGGAAGCCGAGCTGTACAAGGGAGATCGAT TAGTTACTATGTTGGGTAA
AA sequence Show only first row Show all	>Lus10025338 pacid=23157425 polypeptide=Lus10025338 locus=Lus10025338.g ID=Lus10025338.BGIv1.0 annot-version=v1.0 MAGDDGHGGGPDVSPLMIGILGMLAGAIAVATYHCIAVGCYQMHSPDPPRADERGNNAASTTERSQEVSSGSSMSTSNSSGALIPVVRYSKERRSEATCP VCLSDFNEGEPVRSLPACSHLFHVACIDRWLQCHSNCPVCRANAVPVAHVALTVPDMGSRAVQGRSISYYVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10025338 [exp]	0	1
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	2.0	0.8180
AT5G49350			Glycine-rich protein family (....		Lus10034447 [exp]	2.8	0.7532
AT4G08250	GRAS		GRAS family transcription fact...		Lus10033517 [exp]	3.2	0.7731
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10010474 [exp]	3.5	0.7727
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10033764 [exp]	5.3	0.7604
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	6.4	0.8699
AT2G16910	bHLH	AMS, bHLH021	ABORTED MICROSPORES, basic hel...		Lus10042395 [exp]	7.9	0.7855
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041659 [exp]	17.2	0.7806
AT3G20800			Cell differentiation, Rcd1-lik...		Lus10015136 [exp]	19.7	0.7465
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	28.8	0.7449

Compare expression of checked genes

Lus10025338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.