Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37585 460 / 7e-162 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 409 / 4e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 407 / 1e-140 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT5G39990 408 / 2e-140 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 396 / 6e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 393 / 7e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 392 / 3e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 381 / 4e-130 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 368 / 1e-125 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G71070 355 / 2e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024404 [exp] 733 / 0 AT2G37585 468 / 2e-163 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 438 / 2e-152 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 434 / 1e-150 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 402 / 3e-138 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10030084 [exp] 402 / 5e-138 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 395 / 9e-136 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 394 / 4e-135 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10031626 [exp] 382 / 5e-130 AT4G03340 659 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033714 [exp] 379 / 5e-129 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263000 [exp] 538 / 0 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 427 / 3e-148 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 410 / 1e-141 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 406 / 6e-140 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.013G145500 [exp] 398 / 1e-136 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 397 / 4e-136 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 394 / 2e-135 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.009G003300 [exp] 395 / 3e-135 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G066200 [exp] 370 / 3e-126 AT3G03690 486 / 2e-172 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 354 / 5e-120 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10025339 pacid=23157352 polypeptide=Lus10025339 locus=Lus10025339.g ID=Lus10025339.BGIv1.0 annot-version=v1.0 ATGAAGCGATATCACCACACGACGGATCGGAAATGGCTAGTGCCATTGACCGCGCTAGGTGCTCTCTGCTGCATTTTCTTCCTAACTGTCGGTCGAGCCA AGTATCCGGCAGCGGGAAAGGCGAGATCATCTTCGTCGTCCTCCAGCAAATTGAGATCCAGCAGCTTCTCCTCCGACGGTAATTTGGGTGACCCGTTGGA GCTTCCGAAGCTACCCAGATTCGCTTACTTGATATCGGGGATGAAAGGGGAAGTTGATCAGGTGAAACGTCTCCTTCAGGCGGCTTACCACCCTCGGAAT TACTACTTGCTACATCTGGATCTCGAAGCTTCCGACGCCGAGAGGGCCGAGCTGGCCAAGTGTGTGAAATCAGCGGCGATCAGGACATTTGGGAACGTGA TGGTGATTGGTAAGGCCGATTTGGTTACTTATAGAGGACCTACAGTGATTGCCTCTACGCTTCACGGGATTGCAGTGTTGTTGAAGATCGCTGTGGATTG GGATTGGTTTGTCAATCTCAGCTCCTCGGATTATCCCTTAATGCCTCAGGATGATATTCTCCACATGTTCTCTTACTTGCCGAGAGACCTGAACTTCCTG GAGCACACAAGCAGTATTGGATGGAAAGAGTTCCATAGAGCCCGGCCTATAATCATAGATCCAGGGCTGTATCATTCGAAGAAATCGGGTGTATTTTCTG CTAAGGAGAAGAGATCAATGCCTGCTTCTTTCAAAGTATTCTCAGGTTCGGAATGGGTGGTGCTAAGCAGATCATTTCTGGAGTTCTGCGTTTGGGGATG GGACAATCTGCCTCGGACCCTCCTAATGTACTACACCAACTTCATGGCATCCCAAGAGGGATACTTCCACACCGCGGTCTGCAACCACAAAGATTTCCAG AACACTACGGTCAACCACGACCTGCATTACATAACCTGGGACAACCCTCCGAAGCAAAACCCGGTATCCTTAACCTCGGAGCACTTCCGAGACATGGTGG CTAGTGGCGCGCCTTTTGCCCGCCGGTTCGAGAAGGGAGATGGGGTGCTGGACAGAATTGATAGGGAGCTTTTGGGGAGAGTTAGTAATGGTTTCACACC TGGAGGTTGGTGTAGAGATACTTCGTGTGGTGTTTATGGGAGTCCGGATGCTATAAAGCCAAGTGTAAATTCAAAGAGGCTAGAGAAGCTACTGCTGAGA CTTCTTGATCCTGATAGTTTCAGGTCTACACAGTGTAAATAA
AA sequence Show only first row Show all	>Lus10025339 pacid=23157352 polypeptide=Lus10025339 locus=Lus10025339.g ID=Lus10025339.BGIv1.0 annot-version=v1.0 MKRYHHTTDRKWLVPLTALGALCCIFFLTVGRAKYPAAGKARSSSSSSSKLRSSSFSSDGNLGDPLELPKLPRFAYLISGMKGEVDQVKRLLQAAYHPRN YYLLHLDLEASDAERAELAKCVKSAAIRTFGNVMVIGKADLVTYRGPTVIASTLHGIAVLLKIAVDWDWFVNLSSSDYPLMPQDDILHMFSYLPRDLNFL EHTSSIGWKEFHRARPIIIDPGLYHSKKSGVFSAKEKRSMPASFKVFSGSEWVVLSRSFLEFCVWGWDNLPRTLLMYYTNFMASQEGYFHTAVCNHKDFQ NTTVNHDLHYITWDNPPKQNPVSLTSEHFRDMVASGAPFARRFEKGDGVLDRIDRELLGRVSNGFTPGGWCRDTSCGVYGSPDAIKPSVNSKRLEKLLLR LLDPDSFRSTQCK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10025339 [exp]	0	1
AT1G08820		VAP27-2	vamp/synaptobrevin-associated ...		Lus10033837 [exp]	2.4	0.7940
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	4.0	0.8237
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	5.8	0.7979
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	10.6	0.7674
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	11.2	0.7786
AT4G28300			Protein of unknown function (D...		Lus10031645 [exp]	21.2	0.7817
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	24.5	0.7404
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	26.5	0.7567
AT2G41150			unknown protein		Lus10018111 [exp]	27.6	0.7223
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	27.9	0.7482

Compare expression of checked genes

Lus10025339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.