Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37590 150 / 9e-42 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT5G02460 140 / 1e-37 DOF AtDof5. 1 Dof-type zinc finger DNA-binding family protein (.1) AT3G55370 131 / 5e-35 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT2G28810 127 / 3e-33 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 118 / 5e-30 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT4G38000 105 / 3e-26 DOF AtDof4,7 DNA binding with one finger 4.7 (.1) AT3G45610 102 / 6e-25 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 102 / 6e-25 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G51700 100 / 6e-25 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G65590 102 / 3e-24 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016566 [exp] 150 / 1e-41 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10040836 [exp] 145 / 1e-41 AT2G37590 142 / 2e-41 DNA binding with one finger 2.4 (.1) Lus10029458 [exp] 141 / 3e-38 AT3G55370 161 / 6e-47 OBF-binding protein 3 (.1.2.3) Lus10005956 [exp] 131 / 1e-34 AT3G55370 174 / 8e-52 OBF-binding protein 3 (.1.2.3) Lus10040305 [exp] 110 / 1e-26 AT3G55370 147 / 1e-40 OBF-binding protein 3 (.1.2.3) Lus10042114 [exp] 100 / 8e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10007774 [exp] 103 / 5e-25 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10015425 [exp] 102 / 1e-24 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10028611 [exp] 101 / 1e-24 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084200 [exp] 172 / 3e-50 AT2G37590 160 / 2e-46 DNA binding with one finger 2.4 (.1) Potri.001G238400 [exp] 161 / 3e-46 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.010G205400 [exp] 158 / 7e-45 AT2G37590 137 / 7e-38 DNA binding with one finger 2.4 (.1) Potri.008G055100 [exp] 148 / 5e-41 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.009G029500 [exp] 144 / 7e-40 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.015G009300 [exp] 105 / 9e-26 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 105 / 1e-25 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.003G144500 [exp] 103 / 3e-25 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 103 / 1e-24 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.004G046600 [exp] 103 / 2e-24 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025340 pacid=23157398 polypeptide=Lus10025340 locus=Lus10025340.g ID=Lus10025340.BGIv1.0 annot-version=v1.0 ATGGTTTACTCATCAATCCCAGCTTACCTTGATCCAGCTAACTGGCAACAACCACAGATTCATCCACAATCCGGCGGTGACCTCAATATTACTGGAAATG GCAGCCTGCACCAACACCAACACTTCATTTCACATGCCGCTCCCCCGCCGCCCCCTCCACCTCCGCCTCCAACAACCGGCTCGATCCGCCCCGGATCCAT GGCTGACCGGGCCAGGATGGCCAACGTGCCCATGCCCGAACCAGCTTTGAAATGCCCCAGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAAC TACAGCCTCTCCCAGCCTCGCCACTTCTGCAAGACCTGTCGCCGCTACTGGACCCGGGGGGGCGCGCTGAGGAACGTCCCCGTCGGCGGAGGCTGCCGCC GCAGCAACAAGCGCTCCAGCAGCAAAGGCGGAGGAGGAAGTGGAGCATCCTCCTCCAAGTCTCCGGTTAGCGGAGGAGGGGGGAACAATTATACTTCGTC CTGTAATACGTCGTCCTCCGGAGACCACCTCTTCGGGATGGGTGATGGCCCACCTCTCAGGTTCATGGCTCCTCTCCAATATCATTATGGCCTCTCCGAG TTTGGCGGTGGGGACCACCACCATCACCACAGCAATGCCAACAACAGCCATCTATACGGCGGCGTTTTAAACAGTGGTTTGGGTGGTGATTTCCAAGTGG GAGGTGGGGCGGCTGGTTCGGTGATGTCGGGGATGGACATGTGGAGGCTACAGAAGCAGCAAATGCAGATGGGGTTAATGGGAGCGGGGCTGATGGATTC GTCGGCGTCGTCTTCGTCTTCCTCCGGGGCGATAATGTATCCGTTTGAGAGTGGGGAAATGGCGGCTGGGTGGAAGTCGTCGTTAGGGTTGACGAACTGC TCGATGATAACGACGCAGATGGCGGCGGTGAAGATGGAGGAGATGAGCCAGCAGCGTCAACAGCAGTACCGTAATCAGCAACAGGAATCAGCAGGGAGTT TGGCGAGGCAGCTGTTGATGGGGATTAATAGTCAGCAGAATAATAATAATAATAATAATAACATGAATGGGGTTATTAATCATCATGAAGGATATAATAC TAGTTGGGGCATTAATGCAGCTACTGGAGGAGGGTGGACGACGGCGGATCTTTCTAGCTTCAGCTCTTCCTCCACCAGCAACAATCAGCTTTGA
AA sequence Show only first row Show all	>Lus10025340 pacid=23157398 polypeptide=Lus10025340 locus=Lus10025340.g ID=Lus10025340.BGIv1.0 annot-version=v1.0 MVYSSIPAYLDPANWQQPQIHPQSGGDLNITGNGSLHQHQHFISHAAPPPPPPPPPPTTGSIRPGSMADRARMANVPMPEPALKCPRCESTNTKFCYFNN YSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRSNKRSSSKGGGGSGASSSKSPVSGGGGNNYTSSCNTSSSGDHLFGMGDGPPLRFMAPLQYHYGLSE FGGGDHHHHHSNANNSHLYGGVLNSGLGGDFQVGGGAAGSVMSGMDMWRLQKQQMQMGLMGAGLMDSSASSSSSSGAIMYPFESGEMAAGWKSSLGLTNC SMITTQMAAVKMEEMSQQRQQQYRNQQQESAGSLARQLLMGINSQQNNNNNNNNMNGVINHHEGYNTSWGINAATGGGWTTADLSSFSSSSTSNNQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Lus10025340 [exp]	0	1
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002032 [exp]	1.7	0.9132
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10001133 [exp]	3.2	0.9006
AT3G52490			Double Clp-N motif-containing ...		Lus10021291 [exp]	5.7	0.8903
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10035783 [exp]	6.0	0.8895
AT1G11915			unknown protein		Lus10023362 [exp]	6.7	0.8821
AT3G15680			Ran BP2/NZF zinc finger-like s...		Lus10002896 [exp]	8.4	0.8733
AT3G51990			Protein kinase superfamily pro...		Lus10019948 [exp]	8.8	0.8562
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10015425 [exp]	9.6	0.7346
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	11.2	0.8794
AT5G58300			Leucine-rich repeat protein ki...		Lus10034258 [exp]	12.2	0.8602

Compare expression of checked genes

Lus10025340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.