Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19540 637 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 125 / 3e-31 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 114 / 8e-27 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 112 / 1e-26 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 110 / 5e-26 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G29730 98 / 1e-21 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT3G63460 61 / 1e-09 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT4G34460 59 / 2e-09 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT2G43770 55 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35370 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024403 [exp] 797 / 0 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 111 / 3e-26 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 110 / 4e-26 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10020916 [exp] 108 / 2e-25 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033460 [exp] 108 / 2e-25 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 105 / 3e-24 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 101 / 1e-22 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 97 / 2e-21 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 84 / 3e-17 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094000 [exp] 666 / 0 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 663 / 0 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 118 / 2e-28 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 112 / 1e-26 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 112 / 2e-26 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 110 / 4e-26 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 109 / 2e-25 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 105 / 2e-24 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 104 / 5e-24 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G115300 [exp] 55 / 6e-08 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF12265 [flax] [poplar] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Lus10025341 pacid=23157325 polypeptide=Lus10025341 locus=Lus10025341.g ID=Lus10025341.BGIv1.0 annot-version=v1.0 ATGGTTCGCAAGTTAAACCCCAAGAAAGCCAAACGAAAGGTTGATTCTGGATTTTGTTCTTTCCTCGTTAAAATTTTCCCTCACTCTCCTTTTGTTCCAA CCTTCCTGACTCAGTTTCTTCTGCGGTTGTTTGAAATTGATACGCAGGGATCCAAGAATGGCCCGTCGTCTTCATCATCTATGCCATCCATGCCGACAAA GGTCTGGCAACCTGGAGTTGACAAGCTTGAAGAAGGTGAGGAGCTTCAGTGCGACCCCTCTGCCTACAACTCCCTTCACGCCTTCCACGTTGGCTGGCCC TGCTTGAGTTTTGATTTCGTTCGTGATTCTCTCGGTTTAGTTCGGACTGAGTTTCCCCACACACTTTACTTCGTTGCCGGAACTCAAGCGGAGAAGGCTG CTTGGAACTCTGTTGGGATATTCAAAGTCTCTAACGTTTCTGGCAAGAGAAGGGAACTTGTCCCTAGCAAAAAAAGTGCTGATGGGGAGTCCGACGCAGA TGATGATGATGAAGATGAAGATGAAGATAGCAGTGATAGTGAAGATGACTCTGAAGATGAGGAAGCTGGTGGATCAAAAGCACCTACACTACAGATGAGA AGACTGGCTCATGGAGGCTGTGTTAATCGCATACGTGCTATGACTCAGAATCCTCATATTTGCGCAACTTGGTCCGATTCTGGTCATGTACAGATATGGG ATGTCAGTAGTCATCTAAATGCTTTAGCAGAGTCGGAAGCTGATCCAGCAATGAAAGATCCTCCAGTTGTAAATGAAGCCCCACTAGTTAATTTCAAAGG CCACAAGGATGAAGGATACGCCATGGATTGGAGTCCTCATGTTGCTGGAAGGATGGTGACAGGTGATTGCAGGAATTTTATTCATCTGTGGGAGCCTACA TCTGGAACATCATGGAACGTTGATCCTACTCCATTTGTTGGACATATCGCAAGTGTGGAAGATCTGCAGTGGAGTCCGACGGAAGATAACATCTTTGCCT CTTGCTCTGTCGATGGGACGATAGCATTGTGGGACACTCGTCGAGGAAAGATACCAGCTTTACGCTTCAAGGCGCACAATGCTGATGTCAATGTTTTGTC ATGGAACAGGCTGGCTAGTGTCATGTTAGCTTCTGGAAGTGATGATGGTTCGTTTTCCATCCGTGATCTTAGGCTGCTGAAAGAGAACATGGATGGTGAT ACGTCAGTAGTAGCACACTTCGACTACCATAAACACCCGATAACATCAATCGAATGGAGTCATCATGAGGCCTCCACGCTAGCTGTTTCATCAGCAGACA ATCAAATGACGATATGGGATCTGACACTGGAGAGAGACGAGGAAGAGGAAACAGAGTTTAAAGCTCAAACAAAAGAGCAAGTAAATGCTCCTGCAGATAT ACCGCCTCAGCTTCTCTTTGTTCATCAGGGGCAGAAGGATTTGAAGGAGCTGCACTGGCATGCCCAGATTCCAGGGATGATAATATCGACCGCTTCAGAT GGTTTCAATGTCTTGATGCCTACCAACATACAATCTACTCTCCCTTCAGAAGGCAGTTAG
AA sequence Show only first row Show all	>Lus10025341 pacid=23157325 polypeptide=Lus10025341 locus=Lus10025341.g ID=Lus10025341.BGIv1.0 annot-version=v1.0 MVRKLNPKKAKRKVDSGFCSFLVKIFPHSPFVPTFLTQFLLRLFEIDTQGSKNGPSSSSSMPSMPTKVWQPGVDKLEEGEELQCDPSAYNSLHAFHVGWP CLSFDFVRDSLGLVRTEFPHTLYFVAGTQAEKAAWNSVGIFKVSNVSGKRRELVPSKKSADGESDADDDDEDEDEDSSDSEDDSEDEEAGGSKAPTLQMR RLAHGGCVNRIRAMTQNPHICATWSDSGHVQIWDVSSHLNALAESEADPAMKDPPVVNEAPLVNFKGHKDEGYAMDWSPHVAGRMVTGDCRNFIHLWEPT SGTSWNVDPTPFVGHIASVEDLQWSPTEDNIFASCSVDGTIALWDTRRGKIPALRFKAHNADVNVLSWNRLASVMLASGSDDGSFSIRDLRLLKENMDGD TSVVAHFDYHKHPITSIEWSHHEASTLAVSSADNQMTIWDLTLERDEEEETEFKAQTKEQVNAPADIPPQLLFVHQGQKDLKELHWHAQIPGMIISTASD GFNVLMPTNIQSTLPSEGS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19540			Transducin family protein / WD...		Lus10025341 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	7.7	0.8793
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	11.2	0.8808
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	15.8	0.8651
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Lus10035209 [exp]	18.8	0.8650
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	21.8	0.8757
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10002824 [exp]	22.0	0.7838
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10031390 [exp]	22.1	0.8746
AT3G52115		AtCOM1, ATGR1	gamma response gene 1 (.1)		Lus10015699 [exp]	24.3	0.8453
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10009790 [exp]	28.6	0.8692
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031892 [exp]	28.6	0.8580

Compare expression of checked genes

Lus10025341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.