Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02440 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024400 [exp] 290 / 3e-100 AT5G02440 88 / 1e-21 unknown protein Lus10023770 [exp] 95 / 4e-24 AT5G02440 97 / 2e-25 unknown protein Lus10040828 [exp] 54 / 7e-09 AT5G02440 66 / 1e-13 unknown protein Lus10016560 [exp] 54 / 9e-09 AT5G02440 66 / 2e-13 unknown protein Lus10000246 [exp] 45 / 3e-06 AT5G02440 47 / 1e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084400 [exp] 137 / 2e-40 AT5G02440 78 / 5e-18 unknown protein Potri.001G238900 [exp] 90 / 3e-22 AT5G02440 81 / 4e-19 unknown protein Potri.009G030100 [exp] 85 / 2e-20 AT5G02440 98 / 1e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025345 pacid=23157402 polypeptide=Lus10025345 locus=Lus10025345.g ID=Lus10025345.BGIv1.0 annot-version=v1.0 ATGAGGCCTGCGAACGCCAGAGTCGGGTTGTTGAGGAATCCACATAATTTCAATGGCTCTATCTCTTTTACTGCGACCACTCTGCTCACTAGGTCTGCAA GCTCCACTACTGACTCTTCTTCAGCTCTTGATACTGAGTCAACTGGGTCGTTCTTCCATGACAAGAGCATCACATTAGGGAGCTTGATTGGGTTCTCCAA CATTCTTGAATCGTCAAGAAGATCAGTAAGGGGAAGAGGAGGAAGTTCAGCAGGGAGTTTAAAAGAAGAACAAATGTACATCAACAAGCCAAAACCTTGG ATGATCGTCTCATTATGCTCCAGACTGAGCACTGATGCAGTCAACAGTACCACTAACAATAAATATCCTTGTCTTGAGCATTTCCTTCAAGCAGAGAGAC AAGCTGCCTTGACCACCAACACACTCTATTATGGGCCTAGTGATTTTTCACCAATTGCTACTGATGATGCTGCTGCTGCTGGAACAAGTATGAACTCTCT TTTCATTGGTTGTGAGATTGCTCCACAGAGGTTATTGGAACATGGGACTGGGTATGGATCCCCTTCTATACTTTCATGTCTATGTTGCGGACACATCAAT AGCAAAAGCAGGATGATATAA
AA sequence Show only first row Show all	>Lus10025345 pacid=23157402 polypeptide=Lus10025345 locus=Lus10025345.g ID=Lus10025345.BGIv1.0 annot-version=v1.0 MRPANARVGLLRNPHNFNGSISFTATTLLTRSASSTTDSSSALDTESTGSFFHDKSITLGSLIGFSNILESSRRSVRGRGGSSAGSLKEEQMYINKPKPW MIVSLCSRLSTDAVNSTTNNKYPCLEHFLQAERQAALTTNTLYYGPSDFSPIATDDAAAAGTSMNSLFIGCEIAPQRLLEHGTGYGSPSILSCLCCGHIN SKSRMI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02440			unknown protein		Lus10025345 [exp]	0	1
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	1.4	0.9045
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	2.0	0.8734
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	3.5	0.8506
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10030315 [exp]	3.6	0.8147
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	3.9	0.8463
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	8.1	0.8212
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	8.3	0.8533
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	8.5	0.8335
					Lus10018660 [exp]	9.5	0.8390
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	11.2	0.8398

Compare expression of checked genes

Lus10025345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.