Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09410 236 / 2e-75 Pectinacetylesterase family protein (.1.3) AT3G09405 210 / 3e-65 Pectinacetylesterase family protein (.1) AT5G23870 189 / 4e-57 Pectinacetylesterase family protein (.1.2.3) AT3G62060 177 / 1e-52 Pectinacetylesterase family protein (.1) AT3G05910 174 / 2e-52 Pectinacetylesterase family protein (.1.2) AT4G19420 176 / 4e-52 Pectinacetylesterase family protein (.1.2) AT1G57590 176 / 7e-52 Pectinacetylesterase family protein (.1) AT2G46930 171 / 4e-50 Pectinacetylesterase family protein (.1) AT5G26670 169 / 2e-49 Pectinacetylesterase family protein (.1.2) AT4G19410 168 / 3e-49 Pectinacetylesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024398 [exp] 404 / 1e-140 AT3G09410 553 / 0.0 Pectinacetylesterase family protein (.1.3) Lus10038024 [exp] 179 / 3e-53 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10039238 [exp] 176 / 3e-52 AT5G23870 513 / 0.0 Pectinacetylesterase family protein (.1.2.3) Lus10034762 [exp] 171 / 2e-50 AT4G19410 440 / 1e-154 Pectinacetylesterase family protein (.1.2) Lus10007200 [exp] 171 / 7e-50 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 171 / 8e-50 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10037269 [exp] 170 / 1e-48 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033301 [exp] 165 / 7e-48 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 164 / 2e-47 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G084900 [exp] 263 / 1e-85 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.013G000900 [exp] 186 / 6e-56 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 183 / 8e-55 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.012G142300 [exp] 179 / 2e-53 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.010G004400 [exp] 178 / 1e-52 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.015G145400 [exp] 176 / 5e-52 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.014G110900 [exp] 174 / 1e-50 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.004G234100 [exp] 170 / 1e-49 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.003G046200 [exp] 167 / 8e-49 AT5G45280 541 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G233900 [exp] 159 / 6e-46 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF03283 [flax] [poplar] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Lus10025347 pacid=23157370 polypeptide=Lus10025347 locus=Lus10025347.g ID=Lus10025347.BGIv1.0 annot-version=v1.0 ATGCCGAATCCCAGACCATCAACTTGGTTTCTCTGGTGGAGAAAGTGGGGCAAGAAGGATTGGGCAATCGCCGCCATAGGTGTCTCAGTAGTACTCTTCA CTCTGACCCTTCTGTTCGATTCGGGAACCGAGGATCGCCCGACGGCCGGAAACCAGCCATTCGATGTGCCCATCATCAGCGCCGACGATCCAGTGGAATT GACGTTGCTCCGGAACGCCAAGGATAGAGGCGCACTTTGTTTGGACGGGAGCCCACCGGGTTACCATTTCCAGAAAGGATTCGGGTCCGGATCCCACAAG TGGTTGATTCACATTGAAGGCGGGGGATGGTGCAATACGATCGAGTCATGTTCTTTCCGATCCAGGACCCAGTTGGGTTCGTCCAAGTTCATGGAACCCC AAGTTGCATTCGCTGGAATCCTGAGCCGTGATCCCTCCCAGAATCCAGAGGGCAGCTCATTTGGGAAGCTGTTATGGATGAGCTTTTATCTAAAGGAATG GCCAAAGCTAAGCAGATACACTTCAGAAGAAAAGGCTTTTCTCACAGGATGCTCTGCGGGTGGGCTGGCAACTCTTATTCATTGTGATGATTTTCGCAAT CTTTTGCCCAAGGGCGCTTCTGTAAAATGCCTGGCTGATGCAGGTTTTTTCCTCGATGAGAAAGATATTAATGGACAATACACCATGAGATCGTTCTACC AAGACGTTGTCCGCCTTCAGGTCTTGCTTCATCTTCCACCATCTGGAGTTGACAAAAGTTTGCATAAGAAATGTGTATCCAAATCCAAAGCAGACCCATC TGAGACAATCGCACAATCAGTCGGAGATTGGTACTTCAACCATCAGGAAGTCAAGAAAATTGATTGCCCGTATCCCTGCAACCCCACTTGCTATAACATG GATTTTGCTCCACGTTGA
AA sequence Show only first row Show all	>Lus10025347 pacid=23157370 polypeptide=Lus10025347 locus=Lus10025347.g ID=Lus10025347.BGIv1.0 annot-version=v1.0 MPNPRPSTWFLWWRKWGKKDWAIAAIGVSVVLFTLTLLFDSGTEDRPTAGNQPFDVPIISADDPVELTLLRNAKDRGALCLDGSPPGYHFQKGFGSGSHK WLIHIEGGGWCNTIESCSFRSRTQLGSSKFMEPQVAFAGILSRDPSQNPEGSSFGKLLWMSFYLKEWPKLSRYTSEEKAFLTGCSAGGLATLIHCDDFRN LLPKGASVKCLADAGFFLDEKDINGQYTMRSFYQDVVRLQVLLHLPPSGVDKSLHKKCVSKSKADPSETIAQSVGDWYFNHQEVKKIDCPYPCNPTCYNM DFAPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09410			Pectinacetylesterase family pr...		Lus10025347 [exp]	0	1
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	2.2	0.8335
AT5G38880			unknown protein		Lus10034622 [exp]	8.5	0.7493
AT5G66600			Protein of unknown function, D...		Lus10022480 [exp]	14.3	0.7834
AT5G49960			unknown protein		Lus10036585 [exp]	21.2	0.8029
AT3G14470			NB-ARC domain-containing disea...		Lus10029704 [exp]	31.6	0.7780
AT5G42785			unknown protein		Lus10001961 [exp]	64.3	0.7666
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	66.0	0.7792
AT2G46570		LAC6	laccase 6 (.1)		Lus10030235 [exp]	67.5	0.7297
					Lus10004065 [exp]	74.6	0.7325
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	75.5	0.7290

Compare expression of checked genes

Lus10025347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.