Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07630 638 / 0 PLL5 pol-like 5 (.1) AT2G28890 619 / 0 PLL4 poltergeist like 4 (.1) AT3G09400 499 / 5e-170 PLL3 pol-like 3 (.1.2) AT5G02400 446 / 7e-149 PLL2 pol-like 2 (.1) AT2G46920 333 / 1e-103 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT2G35350 313 / 9e-97 PLL1 poltergeist like 1 (.1) AT3G16560 253 / 9e-77 Protein phosphatase 2C family protein (.1) AT3G51370 149 / 1e-39 Protein phosphatase 2C family protein (.1.2) AT5G66080 145 / 3e-38 Protein phosphatase 2C family protein (.1) AT3G55050 145 / 6e-38 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024397 [exp] 1086 / 0 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 417 / 7e-137 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 415 / 4e-136 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10000896 [exp] 345 / 2e-109 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10004554 [exp] 345 / 2e-108 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10004793 [exp] 261 / 1e-79 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 260 / 2e-79 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10041861 [exp] 151 / 4e-40 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10015047 [exp] 149 / 1e-39 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085000 [exp] 665 / 0 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.009G030600 [exp] 420 / 2e-138 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.001G239300 [exp] 415 / 3e-136 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.003G089500 [exp] 352 / 1e-111 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.001G144700 [exp] 350 / 6e-111 AT2G35350 768 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 343 / 8e-107 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.014G110500 [exp] 340 / 9e-106 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.003G159600 [exp] 248 / 1e-74 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 243 / 1e-72 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 237 / 1e-70 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10025348 pacid=23157347 polypeptide=Lus10025348 locus=Lus10025348.g ID=Lus10025348.BGIv1.0 annot-version=v1.0 ATGGGAAACGGGGTTACCAAGGTCAGCAACTGCTTCGCTACTCCGGGAGACATCTCCTCCCGCCGCCACGACATCGTCGTCCACCTCGGCGACCCACTCC ACGAAGGCCTCGGCCATTCCTTCTGCTACATCCGACCCGACCCGGGCAGGATATCTACCCACCACAACTCCAAACTCCACTCCTCCGCCGATGAGACCAC CACCTTCCGATCAATCTCCGGCGCATCCGTCAGCGCCAACACTTCCTCAACTCCTTCCACCGTCCTCACCTCCGACTCTTCCACCACCACGACTTTCAGC TCTGGATTAGAACGCGCCTCCACTTTCGAAAGCTCGGAATCCTTCGCCTCCATTCCTCTCCAGCCCGTCCCCCGCAGCCAGCCCCTCCAACTCTCCGTCC CCGGCTCAGGCCCCATCGAGCGCGGCTTCCTCTCCGGCCCGATCGAGCGTGGATTCTGCTCCGGCCCCATCGATCGCGCTGGCATCTACTCCGGCCCCAT CGATCACGAGTCCGCTCCGAAACAGAGCAATAGCTTCCCACTCCAGAGAAGCATCTCCCACGGAAGTTTCAGAGTCGCCGAGGAAGAAAAAAACGACAAA AAGTCAAGCAAAAAGCTAACGAGAAGAAACTTAATCAAGAAGCTGAAGAGAGTTCTCTCCAAGATTCCGAAATTGAAAAAATCGATCAAAGAAAAATCGG ACTTACCGAACTCGAGCGCGGTCGGGTCGGAAGAGGAGGAAGAAGAAGAAGAAGAAGACACGAGCGAGTTTTCAGTCCGGAGTAATAATCTGGAGTGGGC CCAGGGGAAAGCAGGGGAGGATCGGGTCCACATAGTGATCTCCGAAGAACACGGGTGGGTGTTCGTCGGGATATATGACGGGTTCAACGGACCCGACGCG CCCGACTACCTCCTGTCCAATCTCTACAACGACGTCCAGAGCGAGCTCAAGGGATTGCTGTGGAACGAAAACGATGAATTACCACCGAAAGGGAAAGTGA ATCACTTCGACGTTTTGAGAGCGCTGTCGAGGGCGTTGAGGAAGACGGAGGAGGCCTACTTCGACGTGGCCGACAAAATGGCGGTGGCGAATCCGGAATT GGCGCTGATGGGGTCGTGCGTGTTGGCGATGTTGATGAAAGGAGAAGATGTTTATTTACTCAACGTCGGTGACAGCCGAGCTGTTTTGGCGCAGAGGAAT GAGAGTAACGGGACGAGGAAGAGTCAGGATTTGGGGATGATTACTGAAGAGAGCAGCTGTAATAATGGGTTTGATCAGTTTGAAGACATTGATGGGGATG AGTTTTTCAGGTTTCAGAATTTGAATTGCGTTCAGCTTACCATGGATCACAGCACCTCCATTGACAAGGAGGTACAGAGGATCAAGAGGGAACATCCGGA CGATGCAAATGCAGTGATGAACGATAGGGTGAAAGGCTATCTCAAAGTCACTCGAGCTTTTGGTGTCGGTTTTCTCAAACAGCAAAAATGGAACGACTTA CTATTCGAGAGGTTCAGGATCGATTACGTGGGGAACTCTCCATACATAACTTGCTTCCCGTCACTATACCACCATAGATTGAGTTCGAAAGATAGGTTCT TGATACTGTCATCGGACGGTTTGTATCAATACTTCACGAACGAGCAGGCTGTATCAGAGGTGGAATCGTTTCTATTTACGTTCCCAGAAGGCGATCCTGC TCAACATTTGATCGAAGAGGTTTTGTTTCGTGCCGCTAAGAAAGCTGGGATGGATTTCCACGAGCTGCTCGATATTCCGCAAGGGGATCGGAGAAGGTAC CATGATGATGTTTCGGTGATCATCATCTCTTTCGAAGGCCGGATATGGAGATCTTCTATGTAA
AA sequence Show only first row Show all	>Lus10025348 pacid=23157347 polypeptide=Lus10025348 locus=Lus10025348.g ID=Lus10025348.BGIv1.0 annot-version=v1.0 MGNGVTKVSNCFATPGDISSRRHDIVVHLGDPLHEGLGHSFCYIRPDPGRISTHHNSKLHSSADETTTFRSISGASVSANTSSTPSTVLTSDSSTTTTFS SGLERASTFESSESFASIPLQPVPRSQPLQLSVPGSGPIERGFLSGPIERGFCSGPIDRAGIYSGPIDHESAPKQSNSFPLQRSISHGSFRVAEEEKNDK KSSKKLTRRNLIKKLKRVLSKIPKLKKSIKEKSDLPNSSAVGSEEEEEEEEEDTSEFSVRSNNLEWAQGKAGEDRVHIVISEEHGWVFVGIYDGFNGPDA PDYLLSNLYNDVQSELKGLLWNENDELPPKGKVNHFDVLRALSRALRKTEEAYFDVADKMAVANPELALMGSCVLAMLMKGEDVYLLNVGDSRAVLAQRN ESNGTRKSQDLGMITEESSCNNGFDQFEDIDGDEFFRFQNLNCVQLTMDHSTSIDKEVQRIKREHPDDANAVMNDRVKGYLKVTRAFGVGFLKQQKWNDL LFERFRIDYVGNSPYITCFPSLYHHRLSSKDRFLILSSDGLYQYFTNEQAVSEVESFLFTFPEGDPAQHLIEEVLFRAAKKAGMDFHELLDIPQGDRRRY HDDVSVIIISFEGRIWRSSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07630		PLL5	pol-like 5 (.1)		Lus10025348 [exp]	0	1
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	1.0	0.9640
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	3.5	0.8963
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	3.5	0.9185
AT4G16640			Matrixin family protein (.1)		Lus10007478 [exp]	5.0	0.9051
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10020999 [exp]	5.7	0.8906
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	6.0	0.9124
AT3G11600			unknown protein		Lus10043404 [exp]	9.2	0.8517
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10004876 [exp]	9.9	0.9130
					Lus10025897 [exp]	10.4	0.8865
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	11.2	0.8765

Compare expression of checked genes

Lus10025348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.