Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02370 518 / 2e-175 ATP binding microtubule motor family protein (.1) AT3G49650 154 / 2e-38 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G23910 152 / 3e-38 ATP binding microtubule motor family protein (.1) AT2G28620 152 / 1e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 148 / 2e-36 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 145 / 1e-35 KICP-02 ATP binding microtubule motor family protein (.1) AT2G37420 140 / 4e-34 ATP binding microtubule motor family protein (.1) AT5G41310 139 / 1e-33 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18550 138 / 1e-33 ATP binding microtubule motor family protein (.1) AT1G09170 137 / 4e-33 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024395 [exp] 835 / 0 AT5G02370 593 / 0.0 ATP binding microtubule motor family protein (.1) Lus10039243 [exp] 165 / 3e-42 AT5G23910 396 / 3e-127 ATP binding microtubule motor family protein (.1) Lus10027488 [exp] 164 / 9e-42 AT5G23910 327 / 9e-101 ATP binding microtubule motor family protein (.1) Lus10019245 [exp] 152 / 4e-38 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 152 / 6e-38 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024805 [exp] 142 / 1e-34 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018731 [exp] 142 / 2e-34 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 139 / 1e-33 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10002007 [exp] 139 / 2e-33 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085300 [exp] 590 / 0 AT5G02370 660 / 0.0 ATP binding microtubule motor family protein (.1) Potri.015G146000 [exp] 174 / 2e-45 AT5G23910 439 / 2e-144 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 144 / 2e-35 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 142 / 9e-35 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 142 / 1e-34 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.014G024700 [exp] 141 / 2e-34 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G058400 [exp] 136 / 9e-33 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.007G046700 [exp] 135 / 2e-32 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 135 / 3e-32 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G436200 [exp] 132 / 2e-31 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10025349 pacid=23157399 polypeptide=Lus10025349 locus=Lus10025349.g ID=Lus10025349.BGIv1.0 annot-version=v1.0 ATGGAAACCGCTAAAACTCCGAAATCCTTTAAGACAACAGCACATGCCTCGAAATCTACCACCGCGGACTCCGATTCCGGCTCCAAGGTCAGAGTAATTG TGAGGGTGCGTCCTTTCCTCCCCGCTGAAATCACGCCCAAGCAACAGCTTAGTTCCTGCGTTTCTGCTCTCGAGCAGAGCTCTGAATCCAGAGAAGAAGT GGCTGTTTTCCTCAAAGATCCGGAAACCTGCCGGAATGAGTGCTATATGCTGGATTCGTTCTTTGGTCCTGAAGATGAAAATGTTCATCAGATTTTTCGG AGAGAAGTGAGTCCTTTGATTCCGGGGATCTTTGAGGGATTGAAGTCTTCCTTCCTTCCGTTAACATTCAAAGCACCTGCTGAGTGGTCATCTTCCTTAG CAGCTGCTACTGCTATCTTCATTCCATTCTTCACATTCAATAGTAATGCAACCGTTTTTGCATATGGAGCTACTGGCAGCGGGAAAAGTTACACTATGCA GGGAACTGATGAATTGTCAGGCCTAATGTCACTTGCTATGTCCAATGTACTTTCGATGTGCAACGAAACAGGAAATGGTAAGATTCACCTCAAGGGACTA TCTCGAGTTGCTGTTAGTTCAATGCGAGAGTTCCAGGAGGTGTTCTCTCGTGGGACTCAGAGAAGAAAGACTGCACATACGGATCTAAATGATGTCTCCA GCAGGAGCCACGGGGTGCTGGTGATAACTGTTTCCACTCCTCTTGAATATGGCTCTACCGTTTCTGGGAAGCTGAACCTCATAGATTTAGCTGGTAATGA GGATAATAGGAAGACACTCAATGAGGGTATCCGCCTACTAGAGAGTGCCAAGATCAACCAGTCCTTGTTTGCATTATCAAATGTCATCTATGCACTGAAC AACAACAAACCGTGGGTACCATATCGGGAAAGCAAATTGACAAGGATTTTGCAGGATTCCCTTGGAGGAACAAGTCGTGCTTTGATGGTTGCTTGCCTGA ATCCTGCAGAGTATCAAGAATCAGTACATACCGTCAGCTTGGCATCTAGGTCTCGCCACGTGAAAAATTTTGTGCCTTCAGCTCAGAAGCTGGAGACACC GAAGGTGAAGATGGACATGGAAGTACAACTGAGAGCTTGGCTTGAATCGAAAGGCAAGACAAAGAGTGCCGAAAAACCAAGAGTTTGTGCTTCTCCATTT CCTGTTAGCTCTGCCAAGAAGCTTGATTTCCTAGGCTCAGTAAAGGCAAAGGTCAATACCCACCGCGGAGCTTCAAATTCCAAGAACAGGTTATTGTCCG TTCCTTTCAGGAACTTGCTGCTAAACGAAGAAACTGTTCCTGATCGTTGTGTTGAGAGTCATGTCAGAGCTCCATCTCTCATATTTGTTCACATGAAGCT AAACATGCAGAACACGAAATTTGTTGGTGAGGAAACCACAGAGGGAAAGAGGACTGAAGAAGTTGCACATATTACGGGATTCCATGAGAAGAAAGAGCAC GAAGAGATGAAGATGAAGTCAATGGATTGGAGCCACTTGACAATTGCATCACAATCTGCTGAGAAGAAAAGCAGCATCATGGAGCAAAGCCCTCTGAGAA AAGTGCTCGCTCCCATATGTTCAAACATTAACAGGGTGGCTCTGGCTACTCCTCCAAAAACACCGCTCAATACTCTCCAAGGAGAAAACAACTACAATAA AGCGGTGACCACTCAACTTGAGAAGTTCAACGTCATGAGCGCCAGCCTAAAGAGCTCTCTGATTCAAGAATATCTCAGCTTCCTGAACACGGCCAGCAAA GAGGAACTTCTGGAAATTAAGGGAATCGGAGCAAGGCTTGCGGAATACATAATTGAAGTCCGGGAAACAAGCCCCTTTAGATCCTTGAGTGATCTGGAGA AGATAGGGCTCTCATCGAAGCAGACACAGCAGTTTAGGAAGAGGAAAAGGCGGGGATCAACCAACGATGATCTCTCTCACCATTCAAACACTACCTTCCC ATGTTCATTTACAGGTGCAGGGATCGCAGGTGCACTTGTCGCCGCATTTGCACCCTCCATTCTCGCCGGACTCAGAAGCGCTCTCGAAGCTAGCATTCGC CGGCGCCACTCCCAGGACCACTGTCTCGGTGGCGGCGCTCCTCTCGACGTCCGGATACATCTTGCATCTGTGAACACAACGATTAGTCAGTCAATGACAC AATTGATCATCGACGTACGGAAAAGAATCAGAAGGTTGACAGATCAGTTTCATGCAAAATGCTTACCCTCCACAGCTGGTGCCGCACTTGCATCCGGCGC CGCATCCACAGTTTCCTCCGCAGCACGACGAAGACATTTTCCTTGA
AA sequence Show only first row Show all	>Lus10025349 pacid=23157399 polypeptide=Lus10025349 locus=Lus10025349.g ID=Lus10025349.BGIv1.0 annot-version=v1.0 METAKTPKSFKTTAHASKSTTADSDSGSKVRVIVRVRPFLPAEITPKQQLSSCVSALEQSSESREEVAVFLKDPETCRNECYMLDSFFGPEDENVHQIFR REVSPLIPGIFEGLKSSFLPLTFKAPAEWSSSLAAATAIFIPFFTFNSNATVFAYGATGSGKSYTMQGTDELSGLMSLAMSNVLSMCNETGNGKIHLKGL SRVAVSSMREFQEVFSRGTQRRKTAHTDLNDVSSRSHGVLVITVSTPLEYGSTVSGKLNLIDLAGNEDNRKTLNEGIRLLESAKINQSLFALSNVIYALN NNKPWVPYRESKLTRILQDSLGGTSRALMVACLNPAEYQESVHTVSLASRSRHVKNFVPSAQKLETPKVKMDMEVQLRAWLESKGKTKSAEKPRVCASPF PVSSAKKLDFLGSVKAKVNTHRGASNSKNRLLSVPFRNLLLNEETVPDRCVESHVRAPSLIFVHMKLNMQNTKFVGEETTEGKRTEEVAHITGFHEKKEH EEMKMKSMDWSHLTIASQSAEKKSSIMEQSPLRKVLAPICSNINRVALATPPKTPLNTLQGENNYNKAVTTQLEKFNVMSASLKSSLIQEYLSFLNTASK EELLEIKGIGARLAEYIIEVRETSPFRSLSDLEKIGLSSKQTQQFRKRKRRGSTNDDLSHHSNTTFPCSFTGAGIAGALVAAFAPSILAGLRSALEASIR RRHSQDHCLGGGAPLDVRIHLASVNTTISQSMTQLIIDVRKRIRRLTDQFHAKCLPSTAGAALASGAASTVSSAARRRHFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02370			ATP binding microtubule motor ...		Lus10025349 [exp]	0	1
AT2G40630			Uncharacterised conserved prot...		Lus10030527 [exp]	4.7	0.8792
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10041635 [exp]	5.7	0.9068
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10040117 [exp]	14.0	0.8876
AT5G15510			TPX2 (targeting protein for Xk...		Lus10030650 [exp]	16.6	0.8970
AT5G39900			Small GTP-binding protein (.1)		Lus10007250 [exp]	22.6	0.8728
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10033674 [exp]	24.4	0.8960
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	26.3	0.8915
AT2G46980			unknown protein		Lus10038019 [exp]	26.4	0.8902
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	28.3	0.8948
AT3G15550			unknown protein		Lus10025757 [exp]	30.7	0.8946

Compare expression of checked genes

Lus10025349 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.