Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02310 1646 / 0 PRT6, CER3 proteolysis 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024393 [exp] 3716 / 0 AT5G02310 1770 / 0.0 proteolysis 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G085700 [exp] 2172 / 0 AT5G02310 1719 / 0.0 proteolysis 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02207 [flax] [poplar] zf-UBR Putative zinc finger in N-recognin (UBR box)
Representative CDS sequence Show only first row Show all	>Lus10025352 pacid=23157419 polypeptide=Lus10025352 locus=Lus10025352.g ID=Lus10025352.BGIv1.0 annot-version=v1.0 ATGGACGTCGATTTGCCTCCTGATCCCAGTACGCCAAACAACCGTGTTCTCCAGAAGCTGTCCGACTACGGTGTTCCTAAGGAATGTCTGGAGAGGCTGG GGGAAGGTCTATTGGCATTCGTAGCTGATACACATTCTGACTTGCCGAACTTAGTGTCTGCTATCTTGCCTACCGATGAGGAAGTCGCATTAATGTTTCG AACTCCCAACGTTGAGGTCAAGGCGACATTGAGAAAGCATTTAAAGGAATGCAAGCCGTGGTTGCTGTGGCTAATGTTCTCTGGTGACCCTGAAATATCT CTCAACAATCTGTCTCGGTTGAGTGCTGGCCGTGGTGTCTGTGGGGCTGTTTGGGGAACTAATGATATAGCCTATAGGTGCCGGACTTGCGAACACGATC CGACTTGTGCCATTTGTGTGCCTTGTTTTCAGAATGGTAACCATAAGGACCATGACTACTCTATAATATATACGGGTGGAGGTTGTTGTGATTGTGGAGA CGCGACTGCTTGGAAACGGGAGGGCTTTTGCTCTAAGCATAAAGGTGCAGAACAGATACAAAGTCTTCCACAGGAGTATGCCATCTCGGTAGAACCAGTC CTTGATGTTTTGCTTCATGTTTGGAAGCACAATTTAACTGCTGTGCGGTTGCGATCCCAAGAGAGTGCTAGAGATTTCCTTACAGGCTTCAAGGAGTATG CTACAGAGCTAACGATTTGGATAGTTGAGATGCTGCTGGAGTTTTGCAAGTACAGTGAGAGTTTGTTAAGTTTTGTTTCGAAGCGGGTGACTGCCCTGGA TGGCTTGTTGGAGGTTCTAGTAAGGTCAGAGAGTTCACTGGGCCAGAAGGTGGCAAAAAAACTTCACGAGCTACTTCTTAAATTGCTTGGAGAACCCACA TTCAAATATGAGTTTGCCAAGGTTTTCCTCGGTTATTATCCATTTGTTGTAAATGAAGTCATTAGAGAAGGCAGTGATGCTGCTCTCAAGAAGTATCCAT TGTTGTTGAAGTTCTCTGTCCAGATCTTCACAGTGCCTACTCTAACCCCTCGGCTTGTGAAAGAGATGGATCTCCTTGCTATTCTGCTGCGGTGCTTAGG GGATATATTTTCTTATTGTGCTGGAGAGGATGGCTCTTTGCAGGGATCTAAGTTGGGGAACTTGTACGAGATTGCAGCTCGTGTAGTTGACGATATTCGT TTTGTTATGAGCCATAGTGTTGTGCCAAAGTATATAACCTATGAGCGGAGAGACATCTTGAGAACTTGGATGAAACTGTTGTCTTTCTTGCAAGGAATGA GTTCTTTGAAGAGAGAAACTGGGCTTCACGTAGAAGAAGATAGCGATAATGCAAGCTTACCTTTTTCTCTGGGCCATCCGGTTGCAGAAATCCATTCCCT TTTGGTAAGTGGAGCATTTGCTTGCAAAGATGAGGGTGACGAAGAACTCTTCTTGAGGATGGATACATATGATGTAGATGAAGGAGACAGCCTAAGACAT GCAAAAGTAGGAAGGCTATCTGAGGAAAGTTCAGTGTCTAGTGCGACTGGGAGGAGCAGTACATTTAGTTCTGATACAAAGCTTGATGATACCAAGCCGG AGTCTGGGTTCCATTCTTTGATTCCTTCAGCTGTCACATGGTTAGCCCATGAATGTTTGAGAGCGATAGAGGACTGGCTGGAGGCTGATAATACTTCAGG GCCTATATCATCTCAAAATACTAGCAATATTGCTGACAGCAAGTTTGGAGCTTTGAAAAGAACAATTTCTAAGATTAATAGAGGAAATTATGTCTTTGGA CGTATTTCAAGTGATGATAGCATTAGGTACAGTGCCCTTCCTACAAATAGTCTCATGACTGCCAACTTGGAAGATGCTAGGGGCACAGGTTTGAACTGTA TAGAAAGGCCTGATGTTAGTCCAATAGAAGCAAGTGGCTCAACAGAATTCAATGCGCTACATATTCTTAGTTCGCCAGAGTGGCCTAATATAGTATTTGA TGTTAGTTCACAGCATGTGTCTGTTCATATTTATCTACATAGATTACTTGCCCTTCTTTTGAAAACATCTCTGACAAGGTCATTTGGCGAGTCTGATGTA GACTTTATGGAATCCACAGTCCATAAAGATTTCTTTGGGTGTGTCCTTCAGGGCTACCATCCCTCTGGTTTGTCTGCCTATGTTATGGAGCATCCTTTGC GTAATAGGGTATTCTGTGCGCAAGTTCTGGCTGGAATGTGGAAGAAGAATGGCGATGCTGCTATTTTGTCCTGTGAGTGGTACCGATCTGTTCGCTGGTC TGAGCAGGGTCTGGAACTTGATCTATTTCTTCTTCAGTGCTGTGCTGCATTAGCCCCAGCTGACCTTTATGTTGACAGAATAATTAAGCGATTTGGTCTG TCCGACTACTTCTCTCTGAAATCTGAGACGTCCAGCGAGTATGAACCTGTCTTGGTACAAGCAATGTTGACTCTCATCGTACAAATAGTTCAAGAAAGGC ATTTCTCTGGGCTGACTACTGCTGAGAATCTGAAAAGAGAGCTGATTCGTAGATTAGCCATCGGAGATGCCACTCACAGTCAACTGGTGAAGTCCTTGCC CCTTGACCTCTCCAAGTCTGACCAGCTTCAGGAGATCATTGAACTAGTTGCTGTGTATTCTAATCCATCCGGCTTCAATCAGGGCACATATTCTCTGCGC TCTTCATTTTGGAAAGAGTTAGATTTGTACCATCCTCGGTGGAGCTCAAGGGAGTTGCAGGTTGCTGAAGAAAGATACATGCGCTTTTGTAATGTCCCTG CCTTGACTACTCAGTTGCCCAGATGGAAAAATATATATCTTCCTCTCCAGGGCGTCGCCAGAGTTGCCACCTGTACAGCTGTCCTTCAAGTCATCCGTGC TGTGTTATTTTATGCAGTATTTTCTGATAAGATAAAAGATAAACGTGCTCCTGATGGTGTTCTTCTGACTGCACTGCATCTGCTATCCTTATCATTGGAT GCCTGTGGTCAACAGAGAGAATTGAAGGATGCATCATTTCAACTGGGAGATTCTGCCCCCATAGTGAAACTTTCTGTTGAAGTAATCAGTAATTCATCAC ATTATGGTGCCGGTCAACAGAGTTTAATTTCACTTCTTGTCTCATTAATGTTGATGCACAGACGAGAGAAGTTTAACAACTGCTTGGAAGCTGACAGTTG TGACATTTCTTCTATGATTGAGAGAATTTTGAAGAGAGTCGCTGAGATAAATTGTGGATGCATGACATTACTGCAACAGCTGGCACCTGAAGTGGTCGTT CAGCTGTCACGGTCAATGCCACATGATGACACAGATATGCCAAAGTTTGTGTCTGACAGTGAGAAACGGAAGACCCTAGCTCGAGAGAGACAGGCAGCAG TAATGGCAAAAATGAAAGCGGAGCAATCCAAGTTCTTGTCAAGCATCAACTCTACCATGGATGATGATTCAGAATCTGAACCAGAAGAAAGCAGATCTGA CGATGAGAATGAATTTAAAGATCTGGCGCAAGATGTATGTTCTCTTTGCCATGACTCCGAGTCCAAGGATCCCTTATCTTATTTGGTTCTTCTTCAGAAA TCAAGGCTGCTGAACATTATTGACAGAGGCCCATCTTCATGGGACAAAGTTAGGCAGTCAGATACAGAGCATTTGTCAGGAACTAAGAAAGTGACGGGTC AATCTCGGGTGATCTCCTCACAATTCTTGAAGATCGTGCAGAATATTATAAACGAATCTGCTTCATATGGTACATCTGGGGAGGTAAACACCATTTTCAA AATTTTGAAGGCCGGATTCCCCTCGCTAAAAAATGCTGAAGTACCCTGCACATCCAAAGATGGGAATGACCAGAACATTTACACCTATGAGCAATTGGAA GACAATCTGTATTTGTCCATTAGAAAGGAAATGAATGATTCTGTGGTACATTCCGAGTCAGGAATGGGAAAAGATCACTTTCAAGCAGATGGAAGTAATT TAAATGACTACATGATCACTGATTCTGTATTCCTTGGAAGATACGTGTCTGCTCTTTCTACTGAAATGATTCAGCCTTCAGCTTCTGCAAGTGCTGCTCG TGGTGAGATGCAAGCAGAATCTACATCTGAGCCTTCTTCATATGATGGATTTGGTCCCGAAGGTTGTGATGGGATTCATTTATCTTCCTGTGGTCATGCC GTGCACCAGGCATGTCTTGATCGCTATCTATTATCATTGAAAGAGAGGTACACGAGGAGAAATGTTGTTGAAGGAGCCCATATTGTTAACCCAGATCAGG GAGAATTTCTATGTCCTGTCTGTCGTCGGCTGGCGAACTCCGTCTTGTCTTCATTTCCCGGAAACTTCGAGAAGGATAGGAAGCCCGAGATCTCAACTGC CAGTTCATCTCATTCTTCATCACCATTCATCTTGTCCAATGACAAGAGGGATGCGTTTCTGCTGAACAAAGGCTTTTCTCTCATGAAATCAGCCGCGAGA GTGGTTCGAAATGGAAACATCTTGAGATCGGTTCCAGCTCAGAAAGAGAAAAGGATGGGGCCTAATCTCGACTCTTTCTCTAAAATGCTCTCACAGCTGT ACTTTGGAATGAAACGTGAGAAGTTCTTAGAATCATCAGCGGTAAATGAGTTCATGATTATGTGGGACACACTGAAGTACTCTCTTATCTCTATGGAGAT TTCAGCACGTGCTGGAAATTTGTCTACGACACCTATCTACAGCCTCGATTCCTTGTACAAGGAACTGAACTCATCTAGTGGGTTTACGTTATCCAAGTTG CTAAAGATTGTGCAATTTATGAGGACTAGTAACGTCCTTCACGTGCTCCAAAGATACAGGGGTACTCAGCTCTTCGGGGATTCTATTTGTTTGGAGACAT CCAAGGAATATAGAGACAACGCTAAATCCCATGAAGGTGATATGTTGTGGGAGCAACTTGACAAAGAAGTATTATTTCCAGATGTCCGATTCTGGAGTCG AGCAGCTGATCCTATTATAGCTCATGATGCTTTCTCATCTTTTATGTGGGTTATATTTTGTCTTCCCCAACCATTTTTGTCTTGCGAGGATTTGATGTTG TCCCTAGTACACGTATTCTATTCTGTTACTATACTTCAGGCAATCGTGACATATTGTGGAAACGAAGAATTTAAGTATAACGACTTTCCATTTAGTGATT CCCTTATAACGGACATTATCAACGTTGTGAGGGAATCTGGATCTGCACGACGGCATTTTGTTTCAAACTACTTGGATCGTTCTTGCGACATTACAGTTGC TATTCGCAGATTGAGCTTCCCCTTTTTGAGGAGATGTGCATTGCTGTGGAAATTGCTAAGGACCTCTGTCTCAGCACCATTCTGCAGTAGGAACGACACA CCATCTCATACTGTGGACATGGAGATCGACTTGGTTGAGCTCAATGAAATTGAAAAGTTAGAAAACATGTTCAAGATTCCTCCATTGAATATTGTTTTAA AAGACCATGTTCTTCGAGACAAAGCTATGAAGTGGTACCATCACTTCTGCGGGGTGTCTGGAACTGAAAGCTTCCATGGAACTCTATATTTGACACCTGT AGTGCCATTGAAGTTGATGCAACTACCTCATATTTACCAGGATCTTCCGCAGAGGTATATCAAACAACCTTGTGCTCACTGCAAGACTGTTATTGCTGAG CCTGCACTCTGTCTGCTTTGTGGAAGATTATGCTCTCTAAACTGGAAGCCATGCTGCAGCGAGAGCGGCTGCCAAACCCACACAAAGACTTGCGGTGCTG GCACAGGTGTATTCCTATTGATCAAGAAGACCACAATTCTGTTACAAAGATGCGCCCGACAAGCTCCTTGGCCTTCACCTTACTTGGATGCTTTCGGCGA AGAGGATATAGAGATGCACAGAGGCAAACCCCTATACCTAAATGAAGAACGTTATGCTGCATTATGTCACATGGTTGCTTCTCACGGCCTTGATAGAAGC TCTAGAGTTCTTGGCCAGACCACCATTGGAAACTTCTTCTTGCTGTAG
AA sequence Show only first row Show all	>Lus10025352 pacid=23157419 polypeptide=Lus10025352 locus=Lus10025352.g ID=Lus10025352.BGIv1.0 annot-version=v1.0 MDVDLPPDPSTPNNRVLQKLSDYGVPKECLERLGEGLLAFVADTHSDLPNLVSAILPTDEEVALMFRTPNVEVKATLRKHLKECKPWLLWLMFSGDPEIS LNNLSRLSAGRGVCGAVWGTNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSIIYTGGGCCDCGDATAWKREGFCSKHKGAEQIQSLPQEYAISVEPV LDVLLHVWKHNLTAVRLRSQESARDFLTGFKEYATELTIWIVEMLLEFCKYSESLLSFVSKRVTALDGLLEVLVRSESSLGQKVAKKLHELLLKLLGEPT FKYEFAKVFLGYYPFVVNEVIREGSDAALKKYPLLLKFSVQIFTVPTLTPRLVKEMDLLAILLRCLGDIFSYCAGEDGSLQGSKLGNLYEIAARVVDDIR FVMSHSVVPKYITYERRDILRTWMKLLSFLQGMSSLKRETGLHVEEDSDNASLPFSLGHPVAEIHSLLVSGAFACKDEGDEELFLRMDTYDVDEGDSLRH AKVGRLSEESSVSSATGRSSTFSSDTKLDDTKPESGFHSLIPSAVTWLAHECLRAIEDWLEADNTSGPISSQNTSNIADSKFGALKRTISKINRGNYVFG RISSDDSIRYSALPTNSLMTANLEDARGTGLNCIERPDVSPIEASGSTEFNALHILSSPEWPNIVFDVSSQHVSVHIYLHRLLALLLKTSLTRSFGESDV DFMESTVHKDFFGCVLQGYHPSGLSAYVMEHPLRNRVFCAQVLAGMWKKNGDAAILSCEWYRSVRWSEQGLELDLFLLQCCAALAPADLYVDRIIKRFGL SDYFSLKSETSSEYEPVLVQAMLTLIVQIVQERHFSGLTTAENLKRELIRRLAIGDATHSQLVKSLPLDLSKSDQLQEIIELVAVYSNPSGFNQGTYSLR SSFWKELDLYHPRWSSRELQVAEERYMRFCNVPALTTQLPRWKNIYLPLQGVARVATCTAVLQVIRAVLFYAVFSDKIKDKRAPDGVLLTALHLLSLSLD ACGQQRELKDASFQLGDSAPIVKLSVEVISNSSHYGAGQQSLISLLVSLMLMHRREKFNNCLEADSCDISSMIERILKRVAEINCGCMTLLQQLAPEVVV QLSRSMPHDDTDMPKFVSDSEKRKTLARERQAAVMAKMKAEQSKFLSSINSTMDDDSESEPEESRSDDENEFKDLAQDVCSLCHDSESKDPLSYLVLLQK SRLLNIIDRGPSSWDKVRQSDTEHLSGTKKVTGQSRVISSQFLKIVQNIINESASYGTSGEVNTIFKILKAGFPSLKNAEVPCTSKDGNDQNIYTYEQLE DNLYLSIRKEMNDSVVHSESGMGKDHFQADGSNLNDYMITDSVFLGRYVSALSTEMIQPSASASAARGEMQAESTSEPSSYDGFGPEGCDGIHLSSCGHA VHQACLDRYLLSLKERYTRRNVVEGAHIVNPDQGEFLCPVCRRLANSVLSSFPGNFEKDRKPEISTASSSHSSSPFILSNDKRDAFLLNKGFSLMKSAAR VVRNGNILRSVPAQKEKRMGPNLDSFSKMLSQLYFGMKREKFLESSAVNEFMIMWDTLKYSLISMEISARAGNLSTTPIYSLDSLYKELNSSSGFTLSKL LKIVQFMRTSNVLHVLQRYRGTQLFGDSICLETSKEYRDNAKSHEGDMLWEQLDKEVLFPDVRFWSRAADPIIAHDAFSSFMWVIFCLPQPFLSCEDLML SLVHVFYSVTILQAIVTYCGNEEFKYNDFPFSDSLITDIINVVRESGSARRHFVSNYLDRSCDITVAIRRLSFPFLRRCALLWKLLRTSVSAPFCSRNDT PSHTVDMEIDLVELNEIEKLENMFKIPPLNIVLKDHVLRDKAMKWYHHFCGVSGTESFHGTLYLTPVVPLKLMQLPHIYQDLPQRYIKQPCAHCKTVIAE PALCLLCGRLCSLNWKPCCSESGCQTHTKTCGAGTGVFLLIKKTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALCHMVASHGLDRS SRVLGQTTIGNFFLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	0	1
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	1.7	0.9815
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10002974 [exp]	3.0	0.9769
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	3.2	0.9781
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	3.5	0.9739
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10005068 [exp]	4.1	0.9593
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	5.9	0.9738
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	7.3	0.9723
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	7.4	0.9653
AT2G41790			Insulinase (Peptidase family M...		Lus10018072 [exp]	8.0	0.9362
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10040980 [exp]	8.1	0.9543

Compare expression of checked genes

Lus10025352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.