Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 744 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 727 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 726 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 715 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G16030 673 / 0 HSP70B heat shock protein 70B (.1) AT1G56410 642 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 466 / 1e-158 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 464 / 5e-158 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 421 / 2e-141 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G24280 290 / 6e-90 CPHSC70-1 chloroplast heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024407 [exp] 807 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 806 / 0 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025276 [exp] 797 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 795 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023418 [exp] 734 / 0 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10029455 [exp] 721 / 0 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 721 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 697 / 0 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10002319 [exp] 686 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G205700 [exp] 753 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 749 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054700 [exp] 749 / 0 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 748 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 741 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 732 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 691 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 663 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 622 / 0 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 546 / 0 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10025354 pacid=23157426 polypeptide=Lus10025354 locus=Lus10025354.g ID=Lus10025354.BGIv1.0 annot-version=v1.0 ATGGCCGGTAAAGGAGAAGGTCCTGCTATCGGTATCGATCTCGGTACCACTTATTCTTGCGTCGGTGTCTGGCAGCATGATCGCGTTGAGATCATCGCCA ATGACCAGGGTAACCGTACTACCCCTTCCTACGTCGGATTCACTGATTCCGAGCGTTTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCTAT CAACACTGTTTTCGCTGGTGACACCCATCTTGGTGGCGAAGACTTTGATAACAGAATGGTGAACCACTTCGTCCAAGAGTTCAAGAGGAAGCACAAGAAG GACATCTCTGGAAATCCCAGAGCCCTCAGAAGATTGAGGACATCTTGCGAGAGGGCCAAAAGAACTCTCTCCTCCACCGCCCAGACCACCATCGAAATTG ACTCCTTGTATGAGGGTGTCGATTTCTACTCGACCATCACCCGTGCAAGGTTCGAGGAGCTCAACATGGACCTTTTCCGGAAGTGCATGGAGCCAGTTGA GAAGTGTTTGAGAGATGCTAAGATGGACAAGAGCACGGTCCATGATGCAGTGCTTGTCGGTGGATCCACCAGAATCCCCAAGGTCCAGCAATTGCTTCAG GACTTCTTCAATGGCAAGGAATTGTGCAAGAGCATCAACCCAGACGAGGCTGTTGCCTATGGTGCTGCTGTCCAAGCTGCCATCTTGAGTGGTGAGGGTA ACGAGAAGGTTCAGGACCTTCTATTGCTCGATGTCACCCCACTTTCCCTTGGTTTGGAAACAGCCGGAGGTGTGATGACCGTGTTGATCCCAAGGAACAC TACCATCCCCACCAAGAAAGAACAGGTCTTCTCTACCTACTCAGACAACCAGCCAGGTGTCCTCATCCAGGTTTACGAAGGTGAAAGAACGAGGACAAGG GACAACAACTTGCTTGGCAAGTTCGAGCTCTCCGGTATTCCTCCTGCACCAAGGGGTGTGCCCCAGATCACTGTCTGCTTTGACATCGATGCCAATGGTA TCCTGAACGTGTCTGCGGAGGACAAGACCACCGGACAGAAGAACAAGATCACAATCACCAACGACAAGGGCAGGCTGTCAAAGGAAGACATTGAGAAGAT GGTTCAGGAGGCAGAGAAGTACAAGTCGGAGGACGAAGAGCACAAGAAAAAGGTTGAAGCCAAGAACGCCTTGGAGAACTATTCCTACAACATGAGGAAT ACGATCAAGGACGAGAAGATCGGGGAGAAGCTACCTGCAGCAGACAAAAAGAAGATCGAGGATGCAATTGAGGCGGCGATTCAATGGTTGGACGCCAACC AGTTGGCCGAGGCTGATGAGTTTGAAGATAAGATGAAGGAGTTGGAGAGCCTCTGCAACCCAATCATTGCTAAGATGTATCAGGGAGCTGGAGGTGAAGG TGCTCCCATGGATGATGATGATGTCCCTGCAAGTGCGAGCGGCGGTGCAGGTCCCAAGATTGAGGAGGTCGACTAA
AA sequence Show only first row Show all	>Lus10025354 pacid=23157426 polypeptide=Lus10025354 locus=Lus10025354.g ID=Lus10025354.BGIv1.0 annot-version=v1.0 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFAGDTHLGGEDFDNRMVNHFVQEFKRKHKK DISGNPRALRRLRTSCERAKRTLSSTAQTTIEIDSLYEGVDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDAVLVGGSTRIPKVQQLLQ DFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTR DNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYSYNMRN TIKDEKIGEKLPAADKKKIEDAIEAAIQWLDANQLAEADEFEDKMKELESLCNPIIAKMYQGAGGEGAPMDDDDVPASASGGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025354 [exp]	0	1
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10024407 [exp]	1.0	0.9642
AT1G79930		AtHsp70-14, HSP...	heat shock protein 91 (.1.2)		Lus10037529 [exp]	1.4	0.9552
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10025276 [exp]	2.8	0.9105
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027303 [exp]	3.0	0.9314
AT5G58290		RPT3	regulatory particle triple-A A...		Lus10006854 [exp]	5.5	0.8953
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10020363 [exp]	6.0	0.8933
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Lus10032227 [exp]	8.0	0.8816
AT1G79920		AtHsp70-15	heat shock protein 70-15, Heat...		Lus10011463 [exp]	9.2	0.8844
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10016184 [exp]	9.4	0.8794
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10036776 [exp]	10.0	0.8505

Compare expression of checked genes

Lus10025354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.