Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68140 283 / 2e-95 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT4G08460 224 / 2e-73 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) AT1G77770 206 / 1e-66 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G24740 194 / 2e-60 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT4G31410 161 / 3e-48 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT1G80220 124 / 2e-34 Protein of unknown function (DUF1644) (.1) AT1G15430 124 / 3e-34 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) AT3G25910 98 / 1e-23 Protein of unknown function (DUF1644) (.1) AT2G26050 87 / 1e-20 Protein of unknown function (DUF1644) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004940 [exp] 471 / 2e-169 AT1G68140 319 / 4e-108 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10020957 [exp] 469 / 2e-169 AT1G68140 309 / 1e-104 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10009772 [exp] 233 / 1e-76 AT4G08460 256 / 3e-85 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10024758 [exp] 232 / 5e-76 AT4G08460 251 / 8e-83 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Lus10022809 [exp] 194 / 1e-60 AT3G24740 351 / 1e-120 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10011876 [exp] 194 / 7e-60 AT3G24740 358 / 5e-122 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Lus10043292 [exp] 180 / 3e-55 AT3G25910 282 / 2e-93 Protein of unknown function (DUF1644) (.1) Lus10019436 [exp] 180 / 3e-55 AT3G25910 277 / 3e-91 Protein of unknown function (DUF1644) (.1) Lus10020151 [exp] 168 / 5e-51 AT4G31410 363 / 1e-126 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208800 [exp] 369 / 1e-129 AT1G68140 312 / 6e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.003G021800 [exp] 367 / 2e-128 AT1G68140 315 / 2e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.002G088700 [exp] 260 / 8e-87 AT4G08460 245 / 2e-80 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.005G172300 [exp] 235 / 5e-77 AT4G08460 219 / 2e-70 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2), Protein of unknown function (DUF1644) (.3) Potri.006G154300 [exp] 182 / 4e-56 AT3G25910 152 / 8e-43 Protein of unknown function (DUF1644) (.1) Potri.018G070500 [exp] 180 / 3e-55 AT3G25910 246 / 2e-79 Protein of unknown function (DUF1644) (.1) Potri.002G216600 [exp] 175 / 6e-53 AT3G24740 334 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.006G275400 [exp] 170 / 9e-52 AT4G31410 311 / 4e-106 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.018G006400 [exp] 170 / 2e-51 AT4G31410 331 / 2e-113 Protein of unknown function (DUF1644) (.1), Protein of unknown function (DUF1644) (.2) Potri.003G060800 [exp] 166 / 1e-48 AT3G25910 188 / 3e-55 Protein of unknown function (DUF1644) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF07800 [flax] [poplar] DUF1644 Protein of unknown function (DUF1644)
Representative CDS sequence Show only first row Show all	>Lus10025356 pacid=23150793 polypeptide=Lus10025356 locus=Lus10025356.g ID=Lus10025356.BGIv1.0 annot-version=v1.0 ATGGCTCCTTACCAATTGCCAACATGTGACAGGCACATGCCAGAAGAATTATGTCCAACTAAAGGCTCCAAATGCTTAGATAAGAAAGATTGGGAAGATG CAACTTGCTCAGTCTGCATGGAGTGTCCACATAATGCAGTTCTGTTGCTCTGCTCCTCCCATGACAAGGGTTGCCGTCCCTATATGTGTGGTACTAGCTT CCGTTACTCCAATTGTCTTGACCAATACAAGAAGGCATACACGAAAGTCATCTCCTCGAGCGGGAATGGTGACAATCCATTTTCTGTACCAGACTCGAGT TGGCATGTTGACAAGTGTGGAGTCTCAGAACTTGCTTGCCCTCTGTGCAGAGGCCAAGTGAAAGGATGGACTGTGGTCGAGCCTGCACGAGAACATCTGA ATGATAAGAAAAGAAGCTGCATGCAAGATGAATGCTCATTTGTTGGAACTTACAAAGAATTGAGAAAGCACATGAAGGGGGTTCATCCTTGTGCAAGGCC ACGTGAAACTGATCCTACACTGGAACAGAAATGGCGAAGGCTGGAAGGTGAGCGGGAGCATGATGATGTAATCAGCACAATACGGTCCACAATGCCTGGA TCATTGGTCTTTGGCGATTATGTGATTGAGGGAAACCATCAGGATCTTGATAGTGATGATGAGGATGGTGCTTTTGAAGCAGACGGGATAGAAAGGACGG TTGAGCCAGCCAGAAGAGGAAGGTAG
AA sequence Show only first row Show all	>Lus10025356 pacid=23150793 polypeptide=Lus10025356 locus=Lus10025356.g ID=Lus10025356.BGIv1.0 annot-version=v1.0 MAPYQLPTCDRHMPEELCPTKGSKCLDKKDWEDATCSVCMECPHNAVLLLCSSHDKGCRPYMCGTSFRYSNCLDQYKKAYTKVISSSGNGDNPFSVPDSS WHVDKCGVSELACPLCRGQVKGWTVVEPAREHLNDKKRSCMQDECSFVGTYKELRKHMKGVHPCARPRETDPTLEQKWRRLEGEREHDDVISTIRSTMPG SLVFGDYVIEGNHQDLDSDDEDGAFEADGIERTVEPARRGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68140			Protein of unknown function (D...		Lus10025356 [exp]	0	1
AT1G15860			Domain of unknown function (DU...		Lus10013742 [exp]	4.2	0.7978
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10004915 [exp]	4.6	0.7855
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	7.3	0.7985
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Lus10009232 [exp]	8.1	0.8042
					Lus10017946 [exp]	16.3	0.7153
AT2G32280			Protein of unknown function (D...		Lus10038567 [exp]	19.2	0.7198
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	22.4	0.7574
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	23.7	0.7278
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	24.7	0.7287
AT4G20300			Protein of unknown function (D...		Lus10038379 [exp]	27.3	0.7969

Compare expression of checked genes

Lus10025356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.