Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22040 472 / 2e-164 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 132 / 5e-34 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30090 104 / 3e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 97 / 8e-22 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT2G21950 87 / 2e-18 SKIP6 SKP1 interacting partner 6 (.1) AT3G61350 85 / 1e-17 SKIP4 SKP1 interacting partner 4 (.1) AT1G16250 83 / 5e-17 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 82 / 6e-17 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G02980 80 / 2e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 80 / 4e-16 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020960 [exp] 872 / 0 AT1G22040 499 / 7e-175 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 138 / 7e-36 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 136 / 3e-35 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 105 / 1e-24 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 105 / 2e-24 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 99 / 5e-22 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10023608 [exp] 96 / 2e-21 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 92 / 3e-20 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10002112 [exp] 88 / 1e-18 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170000 [exp] 513 / 2e-180 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G091900 [exp] 508 / 3e-178 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 143 / 6e-38 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 141 / 3e-37 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G193800 [exp] 115 / 6e-28 AT1G30090 604 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G081100 [exp] 97 / 6e-22 AT2G21950 390 / 3e-135 SKP1 interacting partner 6 (.1) Potri.013G104300 [exp] 97 / 7e-22 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G083200 [exp] 96 / 1e-21 AT3G61350 299 / 7e-100 SKP1 interacting partner 4 (.1) Potri.010G059200 [exp] 91 / 1e-19 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G004500 [exp] 89 / 3e-19 AT1G16250 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10025357 pacid=23150867 polypeptide=Lus10025357 locus=Lus10025357.g ID=Lus10025357.BGIv1.0 annot-version=v1.0 ATGATGGGCGCAATTTTGAGCTTAAATGGTTATGGTTCGAGTTCCGGGGTCCCTTTGGAGAAATCACCACGTGTTGGAACTTGTAAGAGACAAAGGGTTT CATCAAATTCTTGTGAGGGAAACCCTCGACTCATTCCCAGTCTTCCTGATGAGATAACATTGGAGATACTTGCTAGGATTCCTAGGGTCCATTACTTGAC AATGAAGCTAGTCTCAAGAGCGTGGAAGTCAACTATCATTCATTCTATACTCTTTGATGTCAGAAAGAAACTCGGAGCAACAGAAGAGTGGCTTTACTTA CTGACAAAGGTTGAAGATGACAAGCTTCTTTGGTATGCTTTGGACCCTGTCAACAATATATGGCAGAGGTTGCCAGCTATACCAAATGCTGTTTACGGTG ATGAAGCGAAGAAGGGGTTGGTTGGTCCTCGGGTTTGGAATATGGTAGGGTCCGGTAAAAAAGTTGCTGATATGGTAAGGAGCTGGTTGGGAAGGAAGGG TGCACCTGAAAGAATGCCCTTTTGTGGCTGTGCTGTTGGAGTTGTAGATGGTTGTCTCTATGTTCTTGGAGGATTCTCAAAAGGTTCAGCGATGAGATGT GTGTGGAAGTATGATCCGATAGTAAATGAGTGGAATGAGGTCAGTCCAATGACTAAGGAGAGAGCATACTCTAAGACAAGTGTGTTAGACAATAAGCTAT ATGTTGTTGGAGGAGTTAATGGTGGTCGTGATGGATTGATGCCACTTCAATCTGCTGAAGTATATGATCCTAAAACAGGTTTATGGTCAAGACTTCCAAG CATGCCTTTCCTGAAAGCTCAAACCATACCCACAGCATTTCTGGCGGATCTGCTCAAGCCCATAGCAACAGGAGTGACTACGTACAGAGGAAAACTGTAT GTGGCACAGAGCTTGTACTGCTGGCCGTTTGTTGTCGATGTTGGTGGTGAGGTTTATGATCCGGTAACAAATGAATGGATTGAAATGCCATCTGGTATGG GTGATGGTTGGCCTCCAAGGCAAGCCGGAAGGAAACTGAGTGTGACAATCGAAGGGGAGTTGTATGCTCTGGATCCATCTGGCTCTGTTGATGGTCCCAG TACTAAAATCCAGGTCTATGACTACCATGAAGATGCGTGGAAGGTTGTTCTCAGAGACGTTCCTATTTGCAGTAATGCTGATTCGGAATCCCACCATCTA CTTACTGGTTTACTTGGGAAGCTCCATGTCGTCACTAAAGATGCAAACTCTAACATCGCTGTTCTACAGGAAGCAGGAATTCACAACTGTGAGGAGGAAT CTCTTGCTTCAGAGTTGGTACCAGATACAGACAATTGGAAAATCATTGCATCCAGAAATGCTGCTTCTTCTGAACTAGTCAACTGCGTGACTCTTGATAT CTGA
AA sequence Show only first row Show all	>Lus10025357 pacid=23150867 polypeptide=Lus10025357 locus=Lus10025357.g ID=Lus10025357.BGIv1.0 annot-version=v1.0 MMGAILSLNGYGSSSGVPLEKSPRVGTCKRQRVSSNSCEGNPRLIPSLPDEITLEILARIPRVHYLTMKLVSRAWKSTIIHSILFDVRKKLGATEEWLYL LTKVEDDKLLWYALDPVNNIWQRLPAIPNAVYGDEAKKGLVGPRVWNMVGSGKKVADMVRSWLGRKGAPERMPFCGCAVGVVDGCLYVLGGFSKGSAMRC VWKYDPIVNEWNEVSPMTKERAYSKTSVLDNKLYVVGGVNGGRDGLMPLQSAEVYDPKTGLWSRLPSMPFLKAQTIPTAFLADLLKPIATGVTTYRGKLY VAQSLYCWPFVVDVGGEVYDPVTNEWIEMPSGMGDGWPPRQAGRKLSVTIEGELYALDPSGSVDGPSTKIQVYDYHEDAWKVVLRDVPICSNADSESHHL LTGLLGKLHVVTKDANSNIAVLQEAGIHNCEEESLASELVPDTDNWKIIASRNAASSELVNCVTLDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22040			Galactose oxidase/kelch repeat...		Lus10025357 [exp]	0	1
AT3G58170		ATBET11, ATBS14...	ARABIDOPSIS THALIANA BET1P/SFT...		Lus10033868 [exp]	1.0	0.9487
AT1G55160			unknown protein		Lus10019322 [exp]	3.5	0.9360
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10040213 [exp]	3.9	0.9271
AT5G11680			unknown protein		Lus10027000 [exp]	4.0	0.9269
AT3G22290			Endoplasmic reticulum vesicle ...		Lus10023828 [exp]	4.2	0.9482
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10021624 [exp]	4.5	0.9387
AT3G45310			Cysteine proteinases superfami...		Lus10034895 [exp]	5.2	0.9344
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	6.5	0.9389
AT3G60540			Preprotein translocase Sec, Se...		Lus10010009 [exp]	7.3	0.9259
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	7.4	0.9363

Compare expression of checked genes

Lus10025357 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.