Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33430 500 / 1e-176 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT1G34210 486 / 1e-170 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 482 / 4e-169 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT2G13790 453 / 5e-158 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 452 / 8e-158 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT5G65240 368 / 8e-125 Leucine-rich repeat protein kinase family protein (.1.2) AT5G10290 358 / 1e-120 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G25560 346 / 6e-116 NIK2 NSP-interacting kinase 2 (.1.2.3) AT1G60800 343 / 7e-115 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 342 / 2e-114 NIK1 NSP-interacting kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020962 [exp] 567 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10006057 [exp] 489 / 8e-173 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 488 / 4e-172 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10023146 [exp] 365 / 3e-126 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10006056 [exp] 365 / 1e-123 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028715 [exp] 363 / 3e-123 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10000629 [exp] 363 / 1e-122 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10019145 [exp] 348 / 8e-117 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10030591 [exp] 348 / 1e-116 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206700 [exp] 533 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 530 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.019G087700 [exp] 493 / 2e-173 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 490 / 2e-172 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 482 / 3e-169 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 481 / 5e-169 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.007G094500 [exp] 369 / 4e-125 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G074200 [exp] 360 / 2e-121 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.008G188800 [exp] 355 / 2e-119 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 355 / 2e-119 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025358 pacid=23150783 polypeptide=Lus10025358 locus=Lus10025358.g ID=Lus10025358.BGIv1.0 annot-version=v1.0 ATGGCTGTGCATCGGAACTTGCTTCGGCTACGCGGTTTCTGTATGACTCCAACTGAGAGAGTACTTGTGTATCCCTATATGGCAAATGGAAGTGTTGCTT CCTGTTTGAGAGAGCGTGTGGAATCACAATCTCCGCTGAACTGGCCAGTGAGGAGGACAATTGCATTAGGTGCTGCACGTGGACTGGCTTATTTGCATGA TCATTGTGATCCCAAGATTATCCATCGGGATGTGAAGGCGGCCAATATATTGTTGGATGAGGAGTTTGAAGCAGTAGTTGGAGACTTTGGGTTGGCTAAA CTGATGGACTACAAGGATACACATGTGACAACTGCTGTGCGTGGCACAATTGGCCATATAGCTCCAGAGTACCTATCAACAGGAAAGTCATCTGAGAAGA CTGATGTTTTTGGATACGGAGTTATGCTTCTTGAGCTCATTACTGGACAGAGGGCCTTTGATCTTGCTAGGCTTGCTAATGATGATGATGTTATGTTGCT TGATTGGGTGAAAGGACTGCTCAAGGACAAGAAGTTGGAGACATTGGTAGATGGAGATCTACAAAATAATTACATTGACGAAGAGGTAGAGCAACTGATA CAGGTGGCTCTACTGTGCACACAAAGCTCACCAATGGAACGTCCTAAGATGTCAGAGGTTGTCAGAATGCTAGAAGGAGATGGTTTGGCGGAGAGATGGG AAGAGTGGCAGAAAGAAGAAATGTTCAGGCAAGATTACAACCATAACCACCATCCTAACAGCAACTGGATCGTGGATTCAACCCCCCATATTCCTCCAGA CGAGCTCTCTGGTCCAAGGTGA
AA sequence Show only first row Show all	>Lus10025358 pacid=23150783 polypeptide=Lus10025358 locus=Lus10025358.g ID=Lus10025358.BGIv1.0 annot-version=v1.0 MAVHRNLLRLRGFCMTPTERVLVYPYMANGSVASCLRERVESQSPLNWPVRRTIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAK LMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKKLETLVDGDLQNNYIDEEVEQLI QVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDYNHNHHPNSNWIVDSTPHIPPDELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	0	1
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	1.4	0.9223
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	2.6	0.9227
AT4G30560		ATCNGC9	cyclic nucleotide gated channe...		Lus10036260 [exp]	3.2	0.8941
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	3.9	0.9199
AT1G11340			S-locus lectin protein kinase ...		Lus10025512 [exp]	4.0	0.9096
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Lus10028575 [exp]	4.7	0.8917
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	5.2	0.8947
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10022592 [exp]	5.3	0.8834
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	6.3	0.8965
AT1G44542			Cyclase family protein (.1)		Lus10014091 [exp]	11.5	0.8984

Compare expression of checked genes

Lus10025358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.