Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14740 455 / 1e-155 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) AT2G14720 451 / 5e-154 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G30290 385 / 2e-128 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT3G52850 382 / 3e-127 VSR1;1, GFS1, BP80-1;1, ATVSR1, VSR-1, VSR1, BP80B, BP-80, BP80, ATELP1 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) AT1G30900 333 / 5e-108 VSR6, VSR3;3, BP80-3;3 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) AT4G20110 330 / 8e-107 VSR7, VSR3;1, BP80-3;1 VACUOLAR SORTING RECEPTOR 3;1, binding protein of 80 kDa 3;1, VACUOLAR SORTING RECEPTOR 7 (.1.2) AT2G34940 311 / 1e-99 VSR5, VSR3;2, BP80-3;2 VACUOLAR SORTING RECEPTOR 3;2, binding protein of 80 kDa 3;2, VACUOLAR SORTING RECEPTOR 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020967 [exp] 523 / 0 AT2G14740 1077 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10012366 [exp] 470 / 3e-161 AT2G14740 1055 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10002130 [exp] 443 / 6e-151 AT2G14740 1025 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10022737 [exp] 405 / 8e-136 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10014176 [exp] 404 / 2e-135 AT3G52850 980 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025220 [exp] 392 / 7e-132 AT3G52850 754 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10025136 [exp] 386 / 1e-128 AT3G52850 959 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Lus10006944 [exp] 334 / 2e-108 AT1G30900 926 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Lus10027694 [exp] 300 / 9e-101 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G294400 [exp] 467 / 3e-160 AT2G14740 1100 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.009G088900 [exp] 466 / 5e-160 AT2G14740 1089 / 0.0 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Potri.016G137300 [exp] 399 / 9e-134 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.006G108800 [exp] 399 / 1e-133 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.003G155200 [exp] 355 / 3e-116 AT1G30900 924 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.001G075600 [exp] 347 / 2e-113 AT1G30900 911 / 0.0 VACUOLAR SORTING RECEPTOR 3;3, binding protein of 80 kDa 3;3, VACUOLAR SORTING RECEPTOR 6 (.1) Potri.016G137350 [exp] 160 / 3e-47 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10025361 pacid=23150816 polypeptide=Lus10025361 locus=Lus10025361.g ID=Lus10025361.BGIv1.0 annot-version=v1.0 ATGGCGGGGACTGTGGTCTACCCTAAGGACAACAAAAACGGTTGCAAGAAGTTTGACGACTTCAGCATTTCATTCAAGTCCAACCCTGGAGCTATGCCCA CTTTCGTTTTGGTGGATCGCGGAGATTACTTCTTTGCGCTGAAGGTTTGGAATGTTCAGAATGCGGGAGCATCTGCTGTGCTTGTTGCTGATGACACTGA TGAAGCACTGATAACCATTGACACACCTCAGGAAGATGGCTTCAGCGACACATTAAAGAAATCACTTGGCAACGGGGATATGGTGAATGTAAACCCCGAT TGGAGAGAAGCTGTTCCACACCCGGATGACCGTGTGGAGTATGAGTTGTGGACCAACAGTAATGATGAATGTGGTGTCAAATGTGACATGTTGATGCAAT TTGTGAAGGAGTTCAAGGGTGCAGCACAGATTCTTGAAAGAGGTGGCTATACTCTGTTTGCTCCTCATTACATAACTTGGTATTGTCCACAGGCATTTAT ACTGAGCAAGCAATGCAAGTCACAGTGTATAAACCATGGAAGATATTGTGGTCCGGATCCCGAGCAGGATTTCAGCACTGGCTATGACGGAAATGAGACC CAACGACCCTGGGTGTGGTGGGATTATGTTACTCATTTTCAGATCAGATGTCCAATGAAAGAGAAAAAGTACAATAAGGAATGTGCCGATAGTGTTATTA GATCTCTTGGACTTGACATGAAAAAGATTGAGAAGTGTATGGGAGATCCAGATGCTGATTCTGATAATCCTGTTTTGAAAGAAGAGCAAGTTGCCCAGAC TCATCGTTTCTCGCATAAACGACCGTTTACGTATCTGAAAAATGAAGTCAGCCTCTGGGGTATTGAGTTGGTGAATGAGGCGTTATCAAGTAAGGACGAT TGTGATTGTGTGATCGAAGGCACGCATGGCCTGCCTTGTATTTGTAGGCTCGAATCTATGGAGTGCGATGGGGTCGAGCTGAAACCATACCAACTCCACA ACTTTTGGCGATCTTTGGAATACCGTCTTCCTGTAGACAGTGAGAAGTGGGAAGACCATGACTCGACAGATCGCGCCATCCTCACCGGAATGGTGCAGAC GATTTGTGATAGAGGTGGGCCCGCTGTACGGGCCTTGACTTCACTGGTGCGGTCTCAGTATCAACCAGAATCTGACGGAGTGAAAGAGCCGAAGAAGTCG GACGCGCCTAAAGGCAGGCCCCGTGGGCGAAAGACTGATGGGCGACACCCTTCGTACCACGAGCATGCAAATGCTCATTGCACCCCATCTAAGGGCAAGA CCAAATCAGGTAGAGGAACTGCGCAAGCGGCTAAACCCACCCCAAGCAAATCTAAAACCTCTATTCCTAACATAGGTGTGTAG
AA sequence Show only first row Show all	>Lus10025361 pacid=23150816 polypeptide=Lus10025361 locus=Lus10025361.g ID=Lus10025361.BGIv1.0 annot-version=v1.0 MAGTVVYPKDNKNGCKKFDDFSISFKSNPGAMPTFVLVDRGDYFFALKVWNVQNAGASAVLVADDTDEALITIDTPQEDGFSDTLKKSLGNGDMVNVNPD WREAVPHPDDRVEYELWTNSNDECGVKCDMLMQFVKEFKGAAQILERGGYTLFAPHYITWYCPQAFILSKQCKSQCINHGRYCGPDPEQDFSTGYDGNET QRPWVWWDYVTHFQIRCPMKEKKYNKECADSVIRSLGLDMKKIEKCMGDPDADSDNPVLKEEQVAQTHRFSHKRPFTYLKNEVSLWGIELVNEALSSKDD CDCVIEGTHGLPCICRLESMECDGVELKPYQLHNFWRSLEYRLPVDSEKWEDHDSTDRAILTGMVQTICDRGGPAVRALTSLVRSQYQPESDGVKEPKKS DAPKGRPRGRKTDGRHPSYHEHANAHCTPSKGKTKSGRGTAQAAKPTPSKSKTSIPNIGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10025361 [exp]	0	1
AT5G50840			unknown protein		Lus10023501 [exp]	3.6	0.8273
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	15.3	0.8111
AT1G64880			Ribosomal protein S5 family pr...		Lus10021785 [exp]	16.5	0.8010
AT3G27930			unknown protein		Lus10008782 [exp]	18.2	0.7901
AT1G42440			unknown protein		Lus10030752 [exp]	18.3	0.8232
AT5G19485			transferases;nucleotidyltransf...		Lus10026802 [exp]	20.3	0.7444
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	22.9	0.8130
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	24.7	0.7986
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	26.8	0.8112
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	26.8	0.7651

Compare expression of checked genes

Lus10025361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.