Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004830 [exp] 322 / 3e-113 AT1G17930 48 / 4e-06 Aminotransferase-like, plant mobile domain family protein (.1) Lus10005957 [exp] 324 / 1e-112 AT1G48120 75 / 1e-14 hydrolases;protein serine/threonine phosphatases (.1) Lus10018964 [exp] 317 / 6e-112 ND / Lus10007688 [exp] 280 / 1e-97 ND / Lus10008249 [exp] 266 / 4e-92 ND 40 / 3e-04 Lus10029058 [exp] 268 / 9e-92 ND / Lus10009744 [exp] 261 / 9e-91 ND / Lus10006899 [exp] 260 / 2e-90 ND / Lus10025360 [exp] 247 / 4e-85 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10025363 pacid=23150792 polypeptide=Lus10025363 locus=Lus10025363.g ID=Lus10025363.BGIv1.0 annot-version=v1.0 ATGATATGCTTGGAGGTTCCCGATTCGACGTTCCGTGGGGTCATTCATTTTGGTCCGACTTTAGAGTATTATGATCCGACGCGTGTGGTTAGACAGTTCG GCTACGCGCAGATGATTCCGGGGCTTATCCCGTTGCCTTCCAGGGCATATAGGGCGGCTGAGCCCAACGGGTACACAGTTGAGTGGACTGACACCACAGA TAGAGCGTGGAGGGACGAGGACTGGTCCAGGCTGATGCCATTTCAGTCTTTGTTTAGGCGTGCAGAGGATGTGACCGAGGTCGACCCCCGATACATGTAC TGGTATCGGCGCCACACCCACCCGCGCATCCTCAGACCCATCCCTACTGGTGTTCCAGCGCCGACAGATATGCTAGCTTACAGGGTGTTCGATCATATGC ATCCATTCCATACTGGGACGATGAGACAAGAGTACGAGTCTGATGCTGAGTACCTAGAGGCGGTCGAGTATCTGAGATGCAGTGTTGCTGACATGTACGT TGACTTCCGACACCAGAGACCGTACCGTTAG
AA sequence Show only first row Show all	>Lus10025363 pacid=23150792 polypeptide=Lus10025363 locus=Lus10025363.g ID=Lus10025363.BGIv1.0 annot-version=v1.0 MICLEVPDSTFRGVIHFGPTLEYYDPTRVVRQFGYAQMIPGLIPLPSRAYRAAEPNGYTVEWTDTTDRAWRDEDWSRLMPFQSLFRRAEDVTEVDPRYMY WYRRHTHPRILRPIPTGVPAPTDMLAYRVFDHMHPFHTGTMRQEYESDAEYLEAVEYLRCSVADMYVDFRHQRPYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025363 [exp]	0	1

Compare expression of checked genes

Lus10025363 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.