Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42860 44 / 1e-05 zinc knuckle (CCHC-type) family protein (.1) AT5G13920 43 / 4e-05 GRF zinc finger / Zinc knuckle protein (.1) AT1G54930 39 / 0.0006 GRF zinc finger / Zinc knuckle protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020975 [exp] 278 / 2e-97 AT5G13920 42 / 5e-05 GRF zinc finger / Zinc knuckle protein (.1) Lus10013881 [exp] 125 / 1e-36 ND 37 / 0.003 Lus10004093 [exp] 42 / 2e-05 ND 39 / 6e-04 Lus10032472 [exp] 41 / 3e-05 ND 35 / 0.004 Lus10011629 [exp] 41 / 7e-05 ND 39 / 6e-04 Lus10014888 [exp] 40 / 0.0002 ND 39 / 7e-04 Lus10026593 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G094001 [exp] 120 / 7e-35 AT3G42860 44 / 3e-05 zinc knuckle (CCHC-type) family protein (.1) Potri.001G318100 [exp] 44 / 1e-05 AT3G42860 211 / 8e-66 zinc knuckle (CCHC-type) family protein (.1) Potri.009G112676 [exp] 43 / 5e-05 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 42 / 6e-05 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125504 [exp] 42 / 8e-05 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.017G079901 [exp] 38 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF06839 [flax] [poplar] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Lus10025368 pacid=23150801 polypeptide=Lus10025368 locus=Lus10025368.g ID=Lus10025368.BGIv1.0 annot-version=v1.0 ATGAGCGGCTGTGATGGATCTGATGCAAGTTCATCATGTCATGGTTCTGATCTGGGCTATGATGATCCCGCACCACAATGCGCTTGTGGATTGCCTTCCA AACTACGAATCTCTCAAACCGCCAGGACCCCTTTCCGCTTATTTTACAACTGTCCAAGGAGATATGAGCAATGTGGCTTCTTCCGTTGGTGTGATGATCC ATCCCTAACTGGTGATAGACACGCTGAAGAGCTCAACCTGATTCGCCATACATGCACTCGACTTCAACGTAGATTGAGTAAAGCCCAAGGCGACCATGAG AGTGACAGAGACAAGTGGGAAATCGAAAAAGAGGAGCTTATCTCTAAATTGTACAGATATAAACTAGAGTTAGATGAATACAAACAGATGATTAGGGTTG GTGCAGAGTCTGATCTTATGCCACCAATTGATGATCAAATCTGGAAATGTGACGAGGACGAGGACGATGGTGCAATTGAGATACATGCTATCTCTAATTA A
AA sequence Show only first row Show all	>Lus10025368 pacid=23150801 polypeptide=Lus10025368 locus=Lus10025368.g ID=Lus10025368.BGIv1.0 annot-version=v1.0 MSGCDGSDASSSCHGSDLGYDDPAPQCACGLPSKLRISQTARTPFRLFYNCPRRYEQCGFFRWCDDPSLTGDRHAEELNLIRHTCTRLQRRLSKAQGDHE SDRDKWEIEKEELISKLYRYKLELDEYKQMIRVGAESDLMPPIDDQIWKCDEDEDDGAIEIHAISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10025368 [exp]	0	1

Compare expression of checked genes

Lus10025368 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.