Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17010 185 / 4e-55 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17020 181 / 2e-53 ATSRG1, SRG1 senescence-related gene 1 (.1) AT1G78550 162 / 2e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 160 / 6e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25300 158 / 4e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 141 / 1e-38 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 134 / 5e-36 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 133 / 3e-35 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G22880 132 / 3e-35 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT3G21420 126 / 8e-33 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015252 [exp] 318 / 6e-107 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1) Lus10011980 [exp] 261 / 2e-84 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10011981 [exp] 261 / 2e-84 AT1G17020 375 / 2e-129 senescence-related gene 1 (.1) Lus10011979 [exp] 249 / 4e-80 AT1G17020 374 / 4e-129 senescence-related gene 1 (.1) Lus10026173 [exp] 204 / 2e-62 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10022292 [exp] 177 / 4e-52 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10032574 [exp] 171 / 2e-49 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011985 [exp] 165 / 2e-47 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10011987 [exp] 164 / 5e-47 AT1G78550 284 / 1e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355100 [exp] 230 / 2e-72 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.001G382400 [exp] 209 / 2e-64 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 189 / 1e-56 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355200 [exp] 176 / 8e-52 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.009G025900 [exp] 172 / 3e-50 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.010G023600 [exp] 147 / 1e-40 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 144 / 9e-40 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 144 / 1e-39 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G022800 [exp] 141 / 2e-38 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.006G101100 [exp] 140 / 2e-38 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10025369 pacid=23150864 polypeptide=Lus10025369 locus=Lus10025369.g ID=Lus10025369.BGIv1.0 annot-version=v1.0 ATGGCTACGGACAGAAGACGATCTTCCTCTGCAACTAAGATCAACGAAGTTCGGAAACCCTCCAAGAACTTTGGGAACTCGATGGCAAGGTTCGATTTCC AGCTGACGGCCACGTCGACAGCGACCGTCGAATTAATTATTTACCAGTATTCCATCTCTCAATTCGTAGCCAAGTTGGTGAACCATGGAGTGAGCAGAGT GCTGGTGGAGAGAGTGAAGGGAGAAGTGAAAGATCTGTTCAACCTACCGGCAGGAGAGAAGGAGAAGTACGGTCAGGAGCCGGCGAGCTTGAAGGTTTCG GGCAAACATTCGTGTAGTACGAAGAGCAGAAGCTCGACTGGGGAGACATGTTCCATGTCACTAGCCTCCCAAACATCTCAGGAAACCTTACTTGTTCCCC TACTTGCCTCTCCCACTCAGGTTAGTTTGCCATCCTCGTCGGTTTTATGGTGGAATACACTGCATGAGTATTCAGAAGCACTGAAGAAACTGGGAATGTC GATCTTGAACTTGCTGGCCAAGGCTCTGGATATGGACCAAACCGAGATTATCAAATGCAGAAACGGTGAAGAACAAACGGTGTTGAAGAAAAGACCACTC TTATCTTTATCTCCTTCTTCTCTGCATTTCTCTGTGAATTTGATCGAGCTTTTGATCAAATTGTTAGAGATTAACGAATTTTTCGAACGAGGGTGGCAGA ATCTGCGTATCAACTACTTCCCACCATGCCCGCAGCCCAAGCTGGTGATGCGTTTGAACTCTCACTCTGATGCAGTCGGGCTCACCATCCTCCTCCAGCT CACCGACAAAAACCCGGGCTTGCAGATCAAGAAGCAGGGCCGCTGGGCTCTGGTCGCCCCTCTCCCCGACGCCTTCATCATCAACGTAGGCGACTTTCTC GAAATTATAAGCAATGGTGTATACAAGAGCATCGAGCACCGAGCGAGAGTCAATTCCAAGAAAGAGCAGATTTCGTTAGCCACTTTCTTGAACCCCAAGC TAGACGGCGAACTAGGTCCGGCGCCGAGCCTCGTTACTCCAGACTCACCACCCAAGTTCAAAAAGGATTGCCGTGAAGGAATACTTCAAAGGGCTGTTTG GGAAAGAGCTCGATGGGAAATCCTACCTTGA
AA sequence Show only first row Show all	>Lus10025369 pacid=23150864 polypeptide=Lus10025369 locus=Lus10025369.g ID=Lus10025369.BGIv1.0 annot-version=v1.0 MATDRRRSSSATKINEVRKPSKNFGNSMARFDFQLTATSTATVELIIYQYSISQFVAKLVNHGVSRVLVERVKGEVKDLFNLPAGEKEKYGQEPASLKVS GKHSCSTKSRSSTGETCSMSLASQTSQETLLVPLLASPTQVSLPSSSVLWWNTLHEYSEALKKLGMSILNLLAKALDMDQTEIIKCRNGEEQTVLKKRPL LSLSPSSLHFSVNLIELLIKLLEINEFFERGWQNLRINYFPPCPQPKLVMRLNSHSDAVGLTILLQLTDKNPGLQIKKQGRWALVAPLPDAFIINVGDFL EIISNGVYKSIEHRARVNSKKEQISLATFLNPKLDGELGPAPSLVTPDSPPKFKKDCREGILQRAVWERARWEILP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17010			2-oxoglutarate (2OG) and Fe(II...		Lus10025369 [exp]	0	1
AT1G30190			unknown protein		Lus10023301 [exp]	6.1	0.9044
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	18.2	0.9041
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	23.6	0.8986
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	27.8	0.9017
					Lus10003784 [exp]	29.7	0.8515
AT3G53400			unknown protein		Lus10026502 [exp]	31.2	0.9014
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	31.6	0.8921
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10010465 [exp]	32.7	0.8971
AT3G07530			unknown protein		Lus10040483 [exp]	42.7	0.8578
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10006405 [exp]	50.7	0.8841

Compare expression of checked genes

Lus10025369 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.