Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29530 50 / 2e-07 unknown protein AT4G18070 41 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015254 [exp] 322 / 5e-112 AT1G29530 50 / 3e-07 unknown protein Lus10004585 [exp] 74 / 3e-15 AT1G29530 54 / 3e-08 unknown protein Lus10011974 [exp] 72 / 1e-14 AT1G29530 48 / 2e-06 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G077700 [exp] 66 / 2e-12 AT1G29530 50 / 1e-06 unknown protein Potri.001G354600 [exp] 60 / 2e-10 AT1G29530 54 / 2e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025373 pacid=23150825 polypeptide=Lus10025373 locus=Lus10025373.g ID=Lus10025373.BGIv1.0 annot-version=v1.0 ATGCCATCAGGTGCAAAGAAGAGGAAAGCTGCTAAGAGAAAGAAGGAACAGCAGGCCCATAACCACCCCGTGGAGAGCAATTTCGGTATCCTAATCAATG GAAACAACCCACATGATGGGCAAGGAAATGGTGATAAAAAAGCTGAAGAATGGAGAAGTAGTGATAGCAGTGAGGTGACTTCGCCAGCATCAGACGGGAA CCCTCATCATACATTCAGTGAGAGAAATGGTTCGTCACTTAATGAACCAGTTTCTGGTGAAAACAAACTCGCAGTAGCAGAGGGAGTAACTGGAGAAGAA GCAGCTAGAAGCAACAATGGAGTGCAGCAGAACAATACAGTGGAAATGAAGGAAGATTTGAAGCCTGCACAGGATGTCAAGAACCAAGATGCTGCTGTTG AGTCGAGTTCTCGGGTAGCGGAGAGTGAAATGGGAGCTACTCAAGTTGGGAACCCTGAAGTCATTGACATGGCTGAAAGTGGATTGAAGGAAAACGAGGA TGTTGAGGTGGTTGCTTCTAGTGCAACTGTAATTGCTGATAAGACATTCACACCATCAGGTGCTAATCAGAATGGCCGTGCGGCTGCAACCAGCACTAAA GACAACCAGTGTCCTGAATCTCCTGAAAACCAGCCTCTTGTGGCTTCAGCTCCACGTTTAGCACAACGAACCTCCTGGTTTAGCTGCTGTGGCTTGTTTG GTGACTAG
AA sequence Show only first row Show all	>Lus10025373 pacid=23150825 polypeptide=Lus10025373 locus=Lus10025373.g ID=Lus10025373.BGIv1.0 annot-version=v1.0 MPSGAKKRKAAKRKKEQQAHNHPVESNFGILINGNNPHDGQGNGDKKAEEWRSSDSSEVTSPASDGNPHHTFSERNGSSLNEPVSGENKLAVAEGVTGEE AARSNNGVQQNNTVEMKEDLKPAQDVKNQDAAVESSSRVAESEMGATQVGNPEVIDMAESGLKENEDVEVVASSATVIADKTFTPSGANQNGRAAATSTK DNQCPESPENQPLVASAPRLAQRTSWFSCCGLFGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29530			unknown protein		Lus10025373 [exp]	0	1
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	2.4	0.8375
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10040225 [exp]	3.0	0.8551
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10004468 [exp]	3.6	0.8758
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	4.0	0.8555
AT3G08890			Protein of unknown function, D...		Lus10002862 [exp]	4.5	0.8390
AT1G67570			Protein of unknown function (D...		Lus10011371 [exp]	5.6	0.7996
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	5.7	0.8187
AT3G57540			Remorin family protein (.1)		Lus10042367 [exp]	9.5	0.8239
AT1G56423			unknown protein		Lus10029844 [exp]	10.0	0.8500
AT5G16550			unknown protein		Lus10003850 [exp]	10.4	0.8108

Compare expression of checked genes

Lus10025373 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.