Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46460 140 / 5e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 125 / 1e-33 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G47580 119 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 124 / 4e-33 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 123 / 6e-33 MEF22 mitochondrial editing factor 22 (.1) AT2G15690 122 / 6e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 120 / 6e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 120 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 119 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 119 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015256 [exp] 182 / 4e-54 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032688 [exp] 129 / 2e-35 AT2G15690 375 / 2e-124 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008570 [exp] 126 / 2e-34 AT2G15690 375 / 9e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035157 [exp] 118 / 2e-34 AT3G26782 221 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020588 [exp] 119 / 5e-33 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 123 / 7e-33 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 120 / 2e-32 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 121 / 3e-32 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019689 [exp] 112 / 3e-32 AT2G22070 246 / 4e-78 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G354400 [exp] 162 / 4e-47 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058300 [exp] 130 / 1e-35 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G091600 [exp] 124 / 2e-33 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 124 / 3e-33 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 120 / 5e-32 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G237100 [exp] 119 / 1e-31 AT3G02010 967 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 119 / 1e-31 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 118 / 3e-31 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G038900 [exp] 117 / 3e-31 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 118 / 4e-31 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025375 pacid=23150810 polypeptide=Lus10025375 locus=Lus10025375.g ID=Lus10025375.BGIv1.0 annot-version=v1.0 ATGGGTTTGACGCACTGGGCAAGGTCGATCACTTCCTCGTCCAAATCACTGATCTCCCATCACTTACCAACCCAGAGATTAGACCAAGCACGTGCAGTCT TCGACACCATCCAATCCCCCGACGCGCATTTATCCACAATGATGATCACGGGTTACACTAGAAACGGCAGAATCGACGATGCCCTGAAGCTGTTCGACAA AATGCCACACAGAGACGAAGCCGGATATGTTGCTGATCAGAGATACGCATTGCATGATGTGGAGGATGAACAGGAGGAAATGCTATCGTATCATAGCGAG AGGATTGCGATCGGATTCATGCTGATTAGTACAGTGGAAGAGAGTAGGATTACGGTAATGAAGAATCTCAGAGCTTGTGGGGATTGCCATGCTGTTATAA AGCTGATATACAAGATTGTGGGAAGGGAGATTGTTGTTAGAGATTCTGGGAGGTTTCACCATTTTAAGGATGGTGTTTGCTCATGCTCAGATTATTATTT AAAAAGTTTAAGAAGGTAA
AA sequence Show only first row Show all	>Lus10025375 pacid=23150810 polypeptide=Lus10025375 locus=Lus10025375.g ID=Lus10025375.BGIv1.0 annot-version=v1.0 MGLTHWARSITSSSKSLISHHLPTQRLDQARAVFDTIQSPDAHLSTMMITGYTRNGRIDDALKLFDKMPHRDEAGYVADQRYALHDVEDEQEEMLSYHSE RIAIGFMLISTVEESRITVMKNLRACGDCHAVIKLIYKIVGREIVVRDSGRFHHFKDGVCSCSDYYLKSLRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10025375 [exp]	0	1
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	18.4	0.5834
AT1G31660			unknown protein		Lus10027134 [exp]	18.8	0.6407
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	21.1	0.6406
					Lus10013570 [exp]	28.1	0.5764
AT2G44820			unknown protein		Lus10026825 [exp]	29.7	0.6242
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	30.4	0.5607
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	32.6	0.6248
					Lus10021453 [exp]	43.0	0.5950
AT2G17580			Polynucleotide adenylyltransfe...		Lus10035995 [exp]	48.7	0.5833
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	50.6	0.5893

Compare expression of checked genes

Lus10025375 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.