Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46410 283 / 5e-91 SSP4 SCP1-like small phosphatase 4 (.1.2) AT4G18140 278 / 3e-89 SSP4b SCP1-like small phosphatase 4b (.1.2.3) AT5G11860 204 / 3e-62 SSP5 SCP1-like small phosphatase 5 (.1.2.3.4) AT1G29780 91 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G29770 86 / 2e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G45700 84 / 8e-18 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G55960 72 / 1e-13 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G17550 51 / 7e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G04930 46 / 2e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G55900 45 / 5e-05 TIM50, EMB1860 embryo defective 1860, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004596 [exp] 496 / 9e-174 AT5G46410 398 / 3e-135 SCP1-like small phosphatase 4 (.1.2) Lus10004551 [exp] 421 / 1e-144 AT5G46410 286 / 8e-92 SCP1-like small phosphatase 4 (.1.2) Lus10015787 [exp] 199 / 1e-58 AT5G11860 410 / 8e-143 SCP1-like small phosphatase 5 (.1.2.3.4) Lus10037019 [exp] 143 / 1e-36 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10007321 [exp] 95 / 2e-21 AT5G45700 206 / 3e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10029273 [exp] 92 / 2e-20 AT5G45700 211 / 4e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10009890 [exp] 72 / 9e-14 AT3G55960 445 / 9e-159 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10014844 [exp] 72 / 1e-13 AT3G55960 441 / 2e-157 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10028284 [exp] 66 / 7e-12 AT3G55960 383 / 2e-134 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G078300 [exp] 419 / 9e-144 AT5G46410 419 / 1e-143 SCP1-like small phosphatase 4 (.1.2) Potri.001G353700 [exp] 416 / 1e-141 AT5G46410 409 / 2e-138 SCP1-like small phosphatase 4 (.1.2) Potri.003G173700 [exp] 206 / 6e-61 AT5G11860 388 / 2e-133 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.001G054700 [exp] 194 / 1e-56 AT5G11860 380 / 2e-130 SCP1-like small phosphatase 5 (.1.2.3.4) Potri.004G062900 [exp] 83 / 1e-17 AT5G45700 194 / 1e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G072000 [exp] 83 / 1e-17 AT5G45700 230 / 5e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.016G116700 [exp] 74 / 2e-14 AT3G55960 248 / 1e-81 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G100800 [exp] 73 / 4e-14 AT3G55960 304 / 6e-103 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.008G068800 [exp] 67 / 4e-12 AT3G55960 342 / 3e-118 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G188500 [exp] 65 / 2e-11 AT3G55960 406 / 8e-144 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10025376 pacid=23150849 polypeptide=Lus10025376 locus=Lus10025376.g ID=Lus10025376.BGIv1.0 annot-version=v1.0 ATGAAGACGAAACTAAGTAGGGGCTACTTAGACGAAAAAAGCCTCAGTGTTTGCCAGATATCCACTGTTATATCCAAGAAATCATGCTCTAATGTAATGG TTTCTCCTCTACTGGAGGCTGACTTGACTATTCAGAAAAGCCAAGTTTTTTCGAGCGGAGCCGGGAAGGTAAATGCTGAAGAAACCAACAAAGCTGAACT CCTTGATCAGCAACAATCGTCAAATCAATGGAACTCCCAGATTCAGTCACATGATTCGAAGGTGGACTCTGGAACTGTTGTGAATAAGGATTCTACACAT AACTGCGCAGATGACTTGGAATCAATCTTTTCACCTGCTTTGGATCCCATTGGACCTGATGGATGGGATATTATTACACAGTCATCTGATTATCAAACCT CCGAGATTTCAGATTTCTCCATCTCCAACATGATCACCTCTTGCCTTCCGTTCGATGGGAATGCAATAGACATAAAGATTGAATCTTTCCCTGATTACAG ATGGGTTGAGCCTAGTATGTTCTTTGATATGGCTCAAGAGTGTATGTTACTCCCTTTCCTAGAAGATATTACCAAAATGACCGATTCCAATGATCTGAAA TCAGGCGTTGCAGATTTTGATACTGGCTTAAATTCAGCTTTCAGCCAACGAACGACTTATAACCAGTTATCTCCGTCTGATCCTATCTCAGACTCTGTTC AGGTGGATAATTTTGATCCCCAGTCATTTATCAGAAATTTACCAGAATTATCAGAGGTTGTATCAAACTTTCAGCCAAGCATGTTCACCAAAGATTCTCA GAGGAGGAAGTCGGTAACGTTAGTGCTTGACTTGGATGAAACACTTGTGCATTCCACATTGGATCACTGTGATGATGCTGACTTCACTTTTACTGTTTCC TTCAACAATGGAGAGCACACTGTATATGTGAAAAAGAGGCCTCACCTACATAAATTCCTGGAAAGAGTTGCGGAGATGTTCGATGTTTTTGTCTTTACAG CCAGCCAAAGTATATATGCCGAAAAACTTCTAGACATACTGGATGCAGAAGATCAGAAACTCATATCTCGACGGTTTTTTCGCGAGTCATGCATATTTTC AGATGGAACTTATACCAAAGATTTGACCGTGTTAGGAGTTGACCTTGCAAAAGTTGCCATAATCGACAATTCTCCACAGGTTTTCAGCATGCAAATAAAC AATGGGATCCCTATTAAGAGCTGGTTTAGTGATCCATCAGACTCTGCTTTACTATCATTACTGCCCTTCTTAGAGACCTTGGCCGATGCTGATGATGTCC GTCCGATAATCGCAAGGAGATTCGGTAACAAGGAATGA
AA sequence Show only first row Show all	>Lus10025376 pacid=23150849 polypeptide=Lus10025376 locus=Lus10025376.g ID=Lus10025376.BGIv1.0 annot-version=v1.0 MKTKLSRGYLDEKSLSVCQISTVISKKSCSNVMVSPLLEADLTIQKSQVFSSGAGKVNAEETNKAELLDQQQSSNQWNSQIQSHDSKVDSGTVVNKDSTH NCADDLESIFSPALDPIGPDGWDIITQSSDYQTSEISDFSISNMITSCLPFDGNAIDIKIESFPDYRWVEPSMFFDMAQECMLLPFLEDITKMTDSNDLK SGVADFDTGLNSAFSQRTTYNQLSPSDPISDSVQVDNFDPQSFIRNLPELSEVVSNFQPSMFTKDSQRRKSVTLVLDLDETLVHSTLDHCDDADFTFTVS FNNGEHTVYVKKRPHLHKFLERVAEMFDVFVFTASQSIYAEKLLDILDAEDQKLISRRFFRESCIFSDGTYTKDLTVLGVDLAKVAIIDNSPQVFSMQIN NGIPIKSWFSDPSDSALLSLLPFLETLADADDVRPIIARRFGNKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Lus10025376 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	9.5	0.7827
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	11.6	0.7749
AT5G50430		UBC33	ubiquitin-conjugating enzyme 3...		Lus10037459 [exp]	16.1	0.8009
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10002264 [exp]	30.2	0.7810
AT2G14910			unknown protein		Lus10013888 [exp]	30.4	0.7559
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	32.2	0.7711
AT1G13570			F-box/RNI-like superfamily pro...		Lus10030569 [exp]	33.8	0.7298
AT5G09680		RLF	reduced lateral root formation...		Lus10019013 [exp]	37.5	0.7523
AT3G14430			unknown protein		Lus10002683 [exp]	47.0	0.7505
AT3G25570			Adenosylmethionine decarboxyla...		Lus10000156 [exp]	48.0	0.7482

Compare expression of checked genes

Lus10025376 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.