Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46400 359 / 3e-110 ATPRP39-2 ,AT PRP39-2 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04080 219 / 5e-61 PRP39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015257 [exp] 770 / 0 AT5G46400 384 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022874 [exp] 234 / 9e-66 AT1G04080 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10024952 [exp] 225 / 1e-62 AT1G04080 879 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G257100 [exp] 213 / 2e-58 AT1G04080 874 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.014G192800 [exp] 147 / 2e-36 AT1G04080 820 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025377 pacid=23150796 polypeptide=Lus10025377 locus=Lus10025377.g ID=Lus10025377.BGIv1.0 annot-version=v1.0 ATGACGCAACCGACGGAGACTCTGTTGGTAATGTTTTCACAGCTGAAGCTCAATTGGAATTCCCTTCTCTTTTGGTTTCCAACAACTGCTGACGAACATG TAGCGCCTGCCAAATATTCGATTAAGCTTTCTGATAACCTCTCTCGCAAGCTGGTCGAGGTCATTGCTGAAGGCTCATTGAAGTTTGAGGAATGGACTTC GCTTATATCGTTGACGGAGAAGACTTACCCTGATGACATGGATAAGATAAATTTAGTGTATCATCCCTTCTTGTCTGAGTATCCTTTGTGCTATGTTTAC TGGAGGAAGTACCTCAACCATGCGATCAAGCTGGGTACCCCTGAAAGGCTGTTGAAGCCTTTGAGCGTGCTGTGGGATCAACTATGTATTGCGTTGATGT TTGGGTTGATTATTGCACCTTTGGCTGTCTGGCCTTTGGTGATCCAGCTGATACTCGCAGCCATGTCCTTCTTGGGAAAGGATTATTTATGTCATTCTTT GTGGGATAAGTACATGGAATTTGAGCTCTCTCAGCAGCGGTGGGATTCTCTGGCTGAAATTTACATCCAAGCACTGAGGTTACCAACCAAAAAGTTTTAT AAGTATTATGATAGCTTTAAGAAGTTGGTAGGAGTTTTGAAAGATGAAATGGGAGTCCAGAGCAAGTCCACCTTGGAAAAGCAGGTTGAACCTGTGCTTA ATGGTGAAGTCTCTATCAGTTGTAAGCTAGATAAATTATTTGGTATCATAAGAGACTTGCTAGATCCATCCTCTGCATCAGTTGGGACTAAAGCTCTGCA GGAGTTTATGGCTATTGGAGAGTATTTCTATCAGAACTCCTGTCTAGTTAATGAAAAAATAAGTAGCTTTGAGGCTAATATAGATCGCTCTTATTTTGAC GTGAAACCACTCGAAGCTCTTAAACTTTACGTGAGGTGCTTAGTTCCTTGTGCCAATTATCCAGAGCTATGGATACGCTATGTGGAATTCATGGAAAGCA AGGGCGGCAGAGAACTAGCAGACTTTGCTCTGAGTCGAGCAATAAACTTTTGTGAAGTGATGCATTTATGCAATGCCTGGTTTAAAGAGCATCTCGGGGA TGTGTCAAATGCACGGGCTGCCTTCCTTGACTGCAATGTGGAATCAGACTTGGATTTTGTTGAAAGCGTCATCAGAAAAGCCAACATCGAAAAGCGTCTT ATTGCTGATGTTTTGCCAGAATGTCAGGGAAATTTCAAAGCAGCTGCAAGAACTTGTAAGCAAGCTTTAAAAGTGGCTGTGACGATGGGTAAACCTGATG TTCTTCCCCTCCTATACATACATTTCTCGAGACTTAAATACATGATGGCTGATAGTGAAGATGCGGCAATCGACATCCTGACAGATGCTATTAAAAAAAC TCCAGGAAACAAGTTACTTATAGAGGAGTTAATAAAGTTTGCTATGGCACATAAAGGATCTAGGCACATCAACGTAGTCAATTCAATCGTCACTGATGCA CTATCCCTCAGTTCAAGCTCATCCATAGGTCTGAGTACACAGGACGGAGAGGACATATCAAGACTAAACTTAGAGTTTGTTGACCTCTGTGGAAATATCC ATGATGTGAGGAAGGCGTGGATTCGGCATGCTACAGCTAACCTATTGCAATCAGGAACTACTGATACCACTGTGCAAGAGGAAATGCACGAGACAGGTAC TGAAGTTCCAAGGGAAGTGAAAGATGATGCTCCTAAACAAGATCTATCTGTTGATTTGGTAAATCAGGGCTCCAGTAAAACTGACAGTGCAGAAGTTCCG TCCCAATTGTTGAAAGAAAATGTCGAAAAGCAAGAAAATCCAAAAGATCTGCCTGAAAAGGATTTGAATAAACTTCAGCTGGAGAAACTATCCTTAGAAC CGCAACAAACTCAATCTCCAGGTGCAGTTAATCACGACTCTGAAGTGCCAAAAAGAAGTGATTCAATTCTTCCTACACCTGATGCTCGCCAAGCTTCTGA TATTCACGGTCTCTCATGTAGCCCAGTTAGCACTAATGCGGCTGTAGTTCATGTCGATGATTGGAATCGTGGTCCTTCATCTTCAGCATGTGATCATAAT AGTGCACAGATGCAGCAAGGCCCCAATCAATGTCAGATCGGGGAAATAAAACTGAAAGACACCGTAGCGATTTCAGACCTGGATATCGTGATCATTCAAG GAGAAGTCGATGGGGCTCTCCACGCTGGCCGTATGCAGAAGTTGAAGCTGCTCCTCATCCTGGCAAAACCCTCAAGATCAGCAAGGTACCCAATTTCCGA CTAG
AA sequence Show only first row Show all	>Lus10025377 pacid=23150796 polypeptide=Lus10025377 locus=Lus10025377.g ID=Lus10025377.BGIv1.0 annot-version=v1.0 MTQPTETLLVMFSQLKLNWNSLLFWFPTTADEHVAPAKYSIKLSDNLSRKLVEVIAEGSLKFEEWTSLISLTEKTYPDDMDKINLVYHPFLSEYPLCYVY WRKYLNHAIKLGTPERLLKPLSVLWDQLCIALMFGLIIAPLAVWPLVIQLILAAMSFLGKDYLCHSLWDKYMEFELSQQRWDSLAEIYIQALRLPTKKFY KYYDSFKKLVGVLKDEMGVQSKSTLEKQVEPVLNGEVSISCKLDKLFGIIRDLLDPSSASVGTKALQEFMAIGEYFYQNSCLVNEKISSFEANIDRSYFD VKPLEALKLYVRCLVPCANYPELWIRYVEFMESKGGRELADFALSRAINFCEVMHLCNAWFKEHLGDVSNARAAFLDCNVESDLDFVESVIRKANIEKRL IADVLPECQGNFKAAARTCKQALKVAVTMGKPDVLPLLYIHFSRLKYMMADSEDAAIDILTDAIKKTPGNKLLIEELIKFAMAHKGSRHINVVNSIVTDA LSLSSSSSIGLSTQDGEDISRLNLEFVDLCGNIHDVRKAWIRHATANLLQSGTTDTTVQEEMHETGTEVPREVKDDAPKQDLSVDLVNQGSSKTDSAEVP SQLLKENVEKQENPKDLPEKDLNKLQLEKLSLEPQQTQSPGAVNHDSEVPKRSDSILPTPDARQASDIHGLSCSPVSTNAAVVHVDDWNRGPSSSACDHN SAQMQQGPNQCQIGEIKLKDTVAISDLDIVIIQGEVDGALHAGRMQKLKLLLILAKPSRSARYPISD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46400		ATPRP39-2 ,AT P...	Tetratricopeptide repeat (TPR)...		Lus10025377 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10043459 [exp]	2.4	0.8885
AT1G04080		PRP39	Tetratricopeptide repeat (TPR)...		Lus10022874 [exp]	4.0	0.8591
AT4G24810			Protein kinase superfamily pro...		Lus10032628 [exp]	5.0	0.8163
AT5G54090			DNA mismatch repair protein Mu...		Lus10032917 [exp]	7.2	0.8636
AT1G17450			B-block binding subunit of TFI...		Lus10037675 [exp]	8.5	0.8728
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	9.2	0.8509
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	10.2	0.8600
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10033845 [exp]	11.3	0.8767
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	11.5	0.8535
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	13.4	0.8600

Compare expression of checked genes

Lus10025377 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.