Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29390 194 / 4e-62 COR413IM2, COR314-TM2 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) AT1G29395 191 / 3e-61 COR413IM1, COR413-TM1, COR414-TM1 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) AT3G50830 60 / 9e-11 ATCOR413-PM2, COR413-PM2 cold-regulated 413-plasma membrane 2 (.1) AT4G37220 59 / 2e-10 Cold acclimation protein WCOR413 family (.1) AT2G23680 48 / 1e-06 Cold acclimation protein WCOR413 family (.1.2) AT2G15970 42 / 0.0001 ATCYP19, FL3-5A3, ATCOR413-PM1, WCOR413-LIKE, COR413-PM1 CYCLOPHILLIN 19, ARABIDOPSIS THALIANA COLD-REGULATED413 PLASMA MEMBRANE 1, cold regulated 413 plasma membrane 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015258 [exp] 392 / 2e-140 AT1G29390 223 / 1e-73 COLD REGULATED 314 INNER MEMBRANE 2, cold regulated 314 thylakoid membrane 2 (.1.2) Lus10004599 [exp] 263 / 5e-89 AT1G29395 201 / 9e-65 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10004547 [exp] 240 / 4e-80 AT1G29395 140 / 3e-41 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Lus10021020 [exp] 63 / 5e-12 AT4G37220 258 / 3e-88 Cold acclimation protein WCOR413 family (.1) Lus10027946 [exp] 58 / 3e-10 AT3G50830 247 / 5e-84 cold-regulated 413-plasma membrane 2 (.1) Lus10012034 [exp] 57 / 7e-10 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Lus10027945 [exp] 57 / 8e-10 AT4G37220 245 / 4e-83 Cold acclimation protein WCOR413 family (.1) Lus10012035 [exp] 56 / 3e-09 AT4G37220 242 / 6e-82 Cold acclimation protein WCOR413 family (.1) Lus10016782 [exp] 52 / 6e-08 AT3G50830 277 / 9e-96 cold-regulated 413-plasma membrane 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353500 [exp] 191 / 3e-61 AT1G29395 185 / 1e-58 cold regulated 414 thylakoid membrane 1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COLD REGULATED 314 INNER MEMBRANE 1 (.1) Potri.007G033801 [exp] 64 / 2e-12 AT3G50830 282 / 1e-97 cold-regulated 413-plasma membrane 2 (.1) Potri.004G149100 [exp] 59 / 2e-10 AT3G50830 250 / 4e-85 cold-regulated 413-plasma membrane 2 (.1) Potri.009G109800 [exp] 57 / 9e-10 AT3G50830 238 / 4e-80 cold-regulated 413-plasma membrane 2 (.1) Potri.007G032000 [exp] 41 / 0.0002 AT4G37220 72 / 7e-16 Cold acclimation protein WCOR413 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05562 [flax] [poplar] WCOR413 Cold acclimation protein WCOR413
Representative CDS sequence Show only first row Show all	>Lus10025378 pacid=23150815 polypeptide=Lus10025378 locus=Lus10025378.g ID=Lus10025378.BGIv1.0 annot-version=v1.0 ATGAGTATCGGCATCTCTTCGAAACCGCTGAGCTTTTGCCTCCAGAACCGCGTCAGTCTCACCGAGAACAAACAGAAACAACGGCTTCTCGCTCTCGACG TCCGACGTTTCCGCAGCTCGGTTACTCCTCTTCGGGTTTCCAGCTCGCTCAGTTACAATCCTCTCAGTTTCGGAATCAAGAGCAACGACGATGCAATTTT GAGGAAGAAGATAGTGGGAGGGAGGATGATCAGTACCGTCTGTTCTGCTGTGCCAGTCAGTTCTGCCCGGAACCTACAGTGGATCTCCACTATTGCTTCC ATGCTGTTGATGCTTGCCAAAGGTACTGCTATCAACAAATGCTTTCTCGTTCCCTTCCTTGCATTGCAGGCACCAACTGCTGTGATATCTTGGGTTAAGG GTGAATATGGTGTGTGGGCTGCATTTATGGCACTTCTAGTACGCCTCTTCTTCTTCATTCCTGGTGAACTAGAGTTGCCATTTATGGCTTTGCTTCTGAT CATCTTAGCGCCGTATCAGGTTCTGAACTTAAAAGGGACACAGGAAGGTGCCATCATTAGCATAGCGATTGCAGCTTACCTGGCTTTCCAGCATTTTTCA CGAGGAGGCAACATGCAGAGATCATTTGAGCAAGGTTCAATTGTTGCCACCGTAGCTATCATCTGTATTACAGTTGCCTCATTCTTGCTCTTGCTCTAA
AA sequence Show only first row Show all	>Lus10025378 pacid=23150815 polypeptide=Lus10025378 locus=Lus10025378.g ID=Lus10025378.BGIv1.0 annot-version=v1.0 MSIGISSKPLSFCLQNRVSLTENKQKQRLLALDVRRFRSSVTPLRVSSSLSYNPLSFGIKSNDDAILRKKIVGGRMISTVCSAVPVSSARNLQWISTIAS MLLMLAKGTAINKCFLVPFLALQAPTAVISWVKGEYGVWAAFMALLVRLFFFIPGELELPFMALLLIILAPYQVLNLKGTQEGAIISIAIAAYLAFQHFS RGGNMQRSFEQGSIVATVAIICITVASFLLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10025378 [exp]	0	1
AT1G29390		COR413IM2, COR3...	COLD REGULATED 314 INNER MEMBR...		Lus10015258 [exp]	1.4	0.9360
AT4G02405			S-adenosyl-L-methionine-depend...		Lus10015003 [exp]	2.8	0.9264
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	4.7	0.9348
AT5G20190			Tetratricopeptide repeat (TPR)...		Lus10002166 [exp]	5.7	0.9175
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	6.7	0.9171
AT5G67130			PLC-like phosphodiesterases su...		Lus10009368 [exp]	7.7	0.8967
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015288 [exp]	8.1	0.9272
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	8.7	0.9241
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	9.8	0.9238
AT1G18265			Protein of unknown function, D...		Lus10035638 [exp]	9.9	0.9103

Compare expression of checked genes

Lus10025378 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.