Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29380 129 / 1e-35 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G30933 117 / 5e-32 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G09460 108 / 1e-27 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G05790 99 / 3e-23 O-Glycosyl hydrolases family 17 protein (.1) AT4G05430 92 / 4e-23 Carbohydrate-binding X8 domain superfamily protein (.1) AT5G55180 96 / 2e-22 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G79480 95 / 2e-22 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G35740 87 / 1e-21 Carbohydrate-binding X8 domain superfamily protein (.1) AT4G26830 93 / 2e-21 O-Glycosyl hydrolases family 17 protein (.1) AT2G42930 87 / 2e-21 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015259 [exp] 287 / 7e-98 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004546 [exp] 205 / 8e-65 AT1G29380 175 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10004600 [exp] 202 / 1e-63 AT1G29380 168 / 7e-50 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10007342 [exp] 129 / 1e-35 AT2G30933 167 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10020765 [exp] 126 / 9e-35 AT2G30933 169 / 4e-52 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001516 [exp] 119 / 4e-31 AT2G30933 143 / 3e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10031443 [exp] 115 / 1e-29 AT2G30933 143 / 2e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10003803 [exp] 100 / 8e-24 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10023276 [exp] 94 / 2e-23 AT4G05430 146 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353400 [exp] 173 / 2e-52 AT1G29380 144 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.011G078500 [exp] 169 / 3e-51 AT1G29380 154 / 1e-44 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.002G059600 [exp] 142 / 3e-41 AT2G30933 164 / 5e-50 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.005G202400 [exp] 130 / 1e-36 AT2G30933 140 / 1e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.013G003500 [exp] 125 / 2e-32 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 121 / 5e-31 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G012000 [exp] 99 / 3e-25 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.019G007800 [exp] 97 / 9e-25 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.007G111000 [exp] 97 / 1e-24 AT4G05430 148 / 5e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.010G173500 [exp] 100 / 4e-24 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10025379 pacid=23150906 polypeptide=Lus10025379 locus=Lus10025379.g ID=Lus10025379.BGIv1.0 annot-version=v1.0 ATGGTGCAGTTGTTGGTTAACTGCATAGCAGTGCAGTGTGGTCAATGGTTAAGCCAAAACTGCACCATGGTGGTGCTGAGGATTCGCACTAACCTTACAG GGAAGCAGCAGCTCGTTGCAGGCATGAGAACCCCACCCTCGGAAAGCAATCCCGGACAGCAAACCAATGCAGAATCGACTGTTCCTATCCTCTTCGATTT CCACAACCCAGCTCGATACAACTGCGAGGGATGTTCCCTCGTGAACCCAACAAGTCCCGACGGACTGCCCATTGCGGACCCAACCGACTCCCCCCCAGCG CCAAGTACTATAATCCCCACACTGACACCGCCAGCCCCTGTATCAGGAAAAACGCAACCTACAACACCAACATTATCAGGAGGAGGACAATGGTGTATAG CTAGTCCGTCTGCTTCAGAAACTGCCTTGCAAGTGGCACTTGATTATGCCTGTGGCTATGGTGCAGACTGCTCGTCGATTCAGTCAGGAGCTAGCTGCTA TAACCTGAACAAACTCCGAGATCATGCATCTTATGCCTTCAATGCTTACTACCAGAAGAACCCAGTTACTACCAGCTGTGTTTTTGGTGGAGCAGCACTA CTAACCAGCACGGACCCAAGTACTGGAAACTGCCATTATGCATCATCCAAGAATCAACCCAGCATGAATCCACCACCATACCCCAGTGGTGTACCAGAGC CACCAGGTCTTCCCAGCTCTGCCACCTCTGCTTCATCAAACCTATTGATGGTCTGTTCACTAGCAGTCAGAATTCTAGGATCTTTAACCATTACGAAACA TCTGTAA
AA sequence Show only first row Show all	>Lus10025379 pacid=23150906 polypeptide=Lus10025379 locus=Lus10025379.g ID=Lus10025379.BGIv1.0 annot-version=v1.0 MVQLLVNCIAVQCGQWLSQNCTMVVLRIRTNLTGKQQLVAGMRTPPSESNPGQQTNAESTVPILFDFHNPARYNCEGCSLVNPTSPDGLPIADPTDSPPA PSTIIPTLTPPAPVSGKTQPTTPTLSGGGQWCIASPSASETALQVALDYACGYGADCSSIQSGASCYNLNKLRDHASYAFNAYYQKNPVTTSCVFGGAAL LTSTDPSTGNCHYASSKNQPSMNPPPYPSGVPEPPGLPSSATSASSNLLMVCSLAVRILGSLTITKHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	0	1
					Lus10011661 [exp]	1.0	0.9224
AT5G12000			Protein kinase protein with ad...		Lus10006021 [exp]	1.4	0.9043
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	1.7	0.9004
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	4.2	0.8812
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10004846 [exp]	4.5	0.8949
AT1G71690			Protein of unknown function (D...		Lus10003512 [exp]	5.0	0.8842
					Lus10001257 [exp]	6.2	0.8483
AT2G41200			unknown protein		Lus10008568 [exp]	12.2	0.8616
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	12.3	0.8680
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	13.4	0.8402

Compare expression of checked genes

Lus10025379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.