Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07610 504 / 4e-165 IBM1 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) AT1G11950 450 / 6e-146 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G62310 441 / 2e-142 transcription factor jumonji (jmjC) domain-containing protein (.1) AT4G00990 304 / 4e-91 Transcription factor jumonji (jmjC) domain-containing protein (.1) AT1G09060 253 / 8e-72 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) AT4G21430 189 / 5e-50 B160 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015260 [exp] 1018 / 0 AT3G07610 627 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10027890 [exp] 625 / 0 AT3G07610 578 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10002391 [exp] 617 / 0 AT3G07610 607 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10004602 [exp] 425 / 3e-142 AT3G07610 313 / 1e-97 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10020033 [exp] 301 / 2e-89 AT1G62310 843 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10004549 [exp] 260 / 1e-74 AT3G07610 173 / 8e-49 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Lus10037812 [exp] 218 / 2e-59 AT1G09060 957 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10017092 [exp] 215 / 1e-58 AT1G09060 962 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Lus10029192 [exp] 181 / 6e-53 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G082901 [exp] 615 / 0 AT3G07610 702 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.005G091200 [exp] 489 / 3e-158 AT3G07610 732 / 0.0 increase in bonsai methylation 1, Transcription factor jumonji (jmjC) domain-containing protein (.1), Transcription factor jumonji (jmjC) domain-containing protein (.2), Transcription factor jumonji (jmjC) domain-containing protein (.3) Potri.004G006200 [exp] 325 / 1e-96 AT1G11950 870 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.011G009700 [exp] 318 / 2e-94 AT1G11950 863 / 0.0 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.015G012800 [exp] 305 / 5e-88 AT4G00990 508 / 4e-157 Transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.013G019000 [exp] 233 / 1e-64 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.004G032700 [exp] 228 / 6e-63 AT4G21430 522 / 1e-169 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1) Potri.005G027000 [exp] 204 / 1e-55 AT1G09060 759 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3) Potri.011G041400 [exp] 199 / 3e-53 AT4G21430 465 / 2e-148 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10025380 pacid=23150811 polypeptide=Lus10025380 locus=Lus10025380.g ID=Lus10025380.BGIv1.0 annot-version=v1.0 ATGAACAAGTTTTTCCGTCCCGATGAGTCAAATGATTTGTTCACCTATTTCGGAGAAGAAGTGAAGTGCGATTACGGAGTTCGTACAACGAGACTGATGA CGCTGAAGTTCGAGAAATACTTTAATTGTCCTTTTTATAAATGTAGGTTCGAGAAGAAGTTGGAGGTGGTGTTGGTTGAGAACTCGGTGAGGCGCGGGAT GCGAGCTACAATGGAGGCGAAGCTTGCTAAGAAGGATGCTAAGATTGAAGTTGTTCGTACTGAGCTGGCACATGATTGTTTTGAATGGAAAAGTGATAGA ATAGGCATCATACGATCAAATGATAGATGGGATCGAGTCCAGTACGGTACCACCTTCCTCCATGACATGGTTCCAAACGTTGAGCTTGCAAGAGCATTGA CAATTTGGAGAATGTGGTATCCCAAGATGAAGCGTGAGGAAGTTGCTGCTAAATGTCCTTTTTGCCGCAACAACTGTAATTGTAAAGACTGCTTGCGTCA GGATGTGAATATGGAGGGTCTGAAGCCCCAAATGACTGTTCAACTAACTAAAGCAAAGGAAAAACAACATGCTGAATATATATTGCAAACACTTTTACCT TTCTTGAAGAAAATAGATGATGAGCAATTGATGGAGAGAAAGATTGATGACAGAATCAAAGGGATTACAGTAAAAGATGTAGATGTAGAAGAATCTGAGT GTTCAGTAGGTGAGCGCTTATATTGGAACTGCTCAGAATGTGAAGTTGATATTTGCCTTATTTGTTGTCGTGAAATCCGTGATGATAATATTCGAGGTAA TGTGCCTAGTGTGGTTTGGAAGTATGTTAACAGATGTTTTGACTACTTACATGGGGCATCTGAAGGGCAGCACCAAGATCCACGAATTTTATTCCCTGTT GGGGTTGACCAGCGCATTACTTCATCTCTGAAACTCAATTCTGCTTGGAAAGCAAATGAAGATGGTAGCATTAGTTGTGCTTGTGGCTCTGGCATTTTAA AGCTTAGAACTGTGATCAATGGTGACTGGGTTTCAGAGATGGTTGATATAGCAGAAGATTTTGTTAAAGGACTTGAGGTTGATTTGGCCAGGGTCTCCTC TAAGCAATGTGCATGTTCTAGTAGCAATTTCGATGTAAAATGTGATAAGTTAATGGAGGCTTCACATCGTAACGACCCCGATGAAAATTATTTGTTCTAT CCAAAGGCTAAAAGTTTGACAGAGGATGAATTTGAGCATTTTCGTCACCATTGGATGAAGGCTGAACCTGTAGTCGTGCGCAATGTGTTTGAAACTGGCT CTGGATTAAGCTGGGAGCCTATGGTTATAAGGCGTGCACTTCGCCAAGTCAAATCCGAGAATCATAATACATTCTTGGATGTGAAGACATTAGATTGTTT GGATTGGTGTGAGGTGGATATTAATGTTCACAAGTTCTTTAAGGGATACTCAGAAGGTGATTTTGATGCTATGGAGTGGCCTAGGATACTGAAGCTAAAA GACTGGCCACCATCGGATATGTTCTATACACGTTTGCAACGGCATGCGGCTGAGTATACCTGTTGTCTGCCCTTTAAGGAGTACACCCATCTTGATGAAG GGCCTCTGAATCTTGCAGCCATGCTTCCTAAAAATTCTCTGAAACCAGACATGGGCCCGAAGACATATATAGGATATGGGTTTCCTCATGAGCTTGGACG TGGAACAGAAGCTCCACTCTTTTTTCAGGTGAATATTTGGGCACATACCCAAGAGATTACCTACTCAAGCGACCAACTTTCTAAGATAGAAGAGTTGAAG GAACAGCATTTTGAGCAGGGCAAAGAAGAGTTAGACAGTGCTGCTGAAGCTATGGAAGGGATTGTGGAAGATAAGAACGATAGTAATGAACTTGTAATCT CCCGAAAGGAGGATGATGTGTTGTGTAAGAATAATTATACTCAGGAGGTGATCAATCCCATACACGATCAAACTTTCTATCTAACCGAGGAGCATAAAAA GAAGCTGAAAGAAGAATTTGGTATTGAACCATGGACGTTCATCCAGAATCTTGGTGATGCCGTCTTCATTCCTGCTGGCTGTCCTCATCAAGTGAGAAAT TTGAAATCGTGCATAAAGGTAGCATCAGACTTTGTCTCGCCTAAAAATGTTGGAGAGTGGATTCGTCTGACAGAGGAGTGCCGCCTTCTTCCAATGAACC ATCCGTCAAAGGAAGATAGGTTGCATATAAGGAAGATGTGTCTCCATGCTGTGGAATGGGCAGTTAATGTTGTCACGGGTAAAGTGGAACCGAATGGAGC TAAGGAAGCCAGTGGTAAAGCGGAATAG
AA sequence Show only first row Show all	>Lus10025380 pacid=23150811 polypeptide=Lus10025380 locus=Lus10025380.g ID=Lus10025380.BGIv1.0 annot-version=v1.0 MNKFFRPDESNDLFTYFGEEVKCDYGVRTTRLMTLKFEKYFNCPFYKCRFEKKLEVVLVENSVRRGMRATMEAKLAKKDAKIEVVRTELAHDCFEWKSDR IGIIRSNDRWDRVQYGTTFLHDMVPNVELARALTIWRMWYPKMKREEVAAKCPFCRNNCNCKDCLRQDVNMEGLKPQMTVQLTKAKEKQHAEYILQTLLP FLKKIDDEQLMERKIDDRIKGITVKDVDVEESECSVGERLYWNCSECEVDICLICCREIRDDNIRGNVPSVVWKYVNRCFDYLHGASEGQHQDPRILFPV GVDQRITSSLKLNSAWKANEDGSISCACGSGILKLRTVINGDWVSEMVDIAEDFVKGLEVDLARVSSKQCACSSSNFDVKCDKLMEASHRNDPDENYLFY PKAKSLTEDEFEHFRHHWMKAEPVVVRNVFETGSGLSWEPMVIRRALRQVKSENHNTFLDVKTLDCLDWCEVDINVHKFFKGYSEGDFDAMEWPRILKLK DWPPSDMFYTRLQRHAAEYTCCLPFKEYTHLDEGPLNLAAMLPKNSLKPDMGPKTYIGYGFPHELGRGTEAPLFFQVNIWAHTQEITYSSDQLSKIEELK EQHFEQGKEELDSAAEAMEGIVEDKNDSNELVISRKEDDVLCKNNYTQEVINPIHDQTFYLTEEHKKKLKEEFGIEPWTFIQNLGDAVFIPAGCPHQVRN LKSCIKVASDFVSPKNVGEWIRLTEECRLLPMNHPSKEDRLHIRKMCLHAVEWAVNVVTGKVEPNGAKEASGKAE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07610		IBM1	increase in bonsai methylation...		Lus10025380 [exp]	0	1
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	3.5	0.8919
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10021854 [exp]	3.7	0.8914
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	4.9	0.8858
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039429 [exp]	8.0	0.8839
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10005631 [exp]	8.4	0.8744
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	9.7	0.8831
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	11.2	0.8523
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10009762 [exp]	12.5	0.8790
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	14.5	0.8716
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10040415 [exp]	15.3	0.8695

Compare expression of checked genes

Lus10025380 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.