Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29370 424 / 1e-136 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 423 / 2e-136 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 131 / 3e-31 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 66 / 7e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT3G07660 58 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13990 52 / 1e-06 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015262 [exp] 1174 / 0 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 782 / 0 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004604 [exp] 770 / 0 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10000188 [exp] 599 / 0 AT1G29350 305 / 6e-96 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007339 [exp] 63 / 5e-10 AT1G29370 79 / 5e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 57 / 5e-10 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 60 / 7e-09 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10041089 [exp] 57 / 4e-08 AT3G07660 662 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10036414 [exp] 57 / 5e-08 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G353100 [exp] 705 / 0 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G078800 [exp] 694 / 0 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 199 / 2e-53 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G217000 [exp] 63 / 6e-10 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 62 / 1e-09 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.005G202851 [exp] 61 / 3e-09 AT1G29370 57 / 2e-08 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 60 / 5e-09 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 57 / 4e-08 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G079800 [exp] 46 / 0.0001 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 43 / 0.001 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10025382 pacid=23150827 polypeptide=Lus10025382 locus=Lus10025382.g ID=Lus10025382.BGIv1.0 annot-version=v1.0 ATGAGCGGGAAAGGAAACCACGGCGGAAAGGTTAGTAATGGAATCTCCGCCATAACTCCGGGCTCCAGGAAGGTAGTCCAGAGCTTGAAAGAGATTGTCA AATGTCCTGAATCGGAGATCTACGCGATGCTCAAGGACTGTGACATGGACCCTAACGAGGCCGTTAATCGTCTCCTCACTCAAGATCCTTTCCACGAAGT TAAGAGCAAACGAGAAAAGAAAAAAGAGACCAAGGATACAACTGATCTGAGGCCCCGTGGGGCTAACAATGTAACACATCGTGGGGCCAGGAGTGGCTCA GACCGGTATGGACGTGGTGGATCAAGCCAATTTCGATCTACTGAATCCAGTGTTGTACATGGTAAGCCTGCTTATAGGAAGGAAAATGGAGCCCATGCTT ATGCTGGGTCTACCTCCTATGCTTCCGCTACTGCAGGAAACAATGGTGGTCGGCGAGCTGAGCTTACCAGAGACTCTTCAGGTACTGAAAATAAAGCACC GACTATAAGTGCAGGCGATGACTTTTTTGCACCAGCTCAGCCTGCCTCTGGAGTTCAATCTGCATGGATTGGGAATCCAGGTCAAGTATCAATGGCAGAT ATTGTGAAAATGGGAAAGCCTCAGAGTAAGACATCTGCATTACCTAACCACACTGGATGGGCACCTCCTGCACATAATCATATACATTCATCTGAAAATG GTGCTCCGAAAGAGTCAGAAATTCGCAACGAGCAAGAAGCTTCTGCAAGTCAGCATCTTTATTCTAATAATGACTGGCCAGCAACTGAGCAGCCATCTGA TGCTACTGTGTCATCTTTCATGGAGCCACCTACAGATCCCGACATATATGAAAAGCCATCAACTTTAGCTTCTTTAGATAGAGAAAATGAGCATGTGAGG TCTGAGATTGATGAAGTTCAATCGGAAGAGGATGATCTTGATGAAAGCCCAGTTGGGCCTTCTTCTGTACCTAATATACAAATACAGGAGGAAGGCAATG CAGGTTCCTCACTTGTAGACAATGATCTCTATGAGAATATTAACTCCCACGAATCCAACGGACATGCTTTTGAGCGTAATGACGCCGAGGAGAGTTCTTC AAGTTTGCAGCAATTGAACTTGCACACCGATGCTAAAGTTGTACCGCCTGAAGAAGATAACCCTGTTGTAATAATCCCTATCATCTTCAATTCGCGTTTG TCTGGTCCATTCGCATCTCAATCCTTGTCAAATAACTCGGAAGAGACTTCCAAACCAGTGGAACCCACCACAGTAGGACACTCGGATGCTAGAGATCCAG AGTATTATGAGGATGTTCTAAGAAATGCTGCTGAAGATAATTTAGTTCATGGAACTAATATAAACGTTGGGAACTATGATTCCCCTTCTGTCCCTCAACC ACAAGTCTTAAAGGAAGAAACACAGGAAGCTGCTCAGGGAAATCAAGATCCTTTCGTATCATCTACGCCCGGCTATAATTATGACAACAATCAGCATTTG GATGCTGCACTTAGAAGCCAACAGTCAAGCTCTCAGTTGCAGAATATTGCTGGCTTCTCAAGTGTGATGGCTTATTCAAACTCATTGCCTACTGCATTGC TGGCTTCAAATTTGCCAACTGGGAGGGAGTCTGACCTTCCATACTCACCATTCCCAACGAATCAATCCATGCCTACGAAGTATAACACTAACGCCTCCGC CGTCAATGGTCCAAGCATTTCCATGCCAGAGGCATTGAGAGCGTCCAACATTTCGACACCTCAGCCAACGCAACAGTCACTTGGTGGCGCCGCTGTGGCA GCCATCGGACACACTCTTCCGCAACACCTCGCTGTCCATCCGTATTCCCAAACTGCCCTTCCTTTGGCCCAGTACACCAACATGATCGGCTATCCTTTCT TGCCTCGGAGCTACGCTTATATGCCGTCGGCTTTCCAACAGGCGTTTCCGAGAAACAGTACTTACCACCAGTCTCTGGCAGCTCTTCTCCCTCAGTACAA GAACAGTGTCTCTGTAAGCAGCTTGCCCCAATCTGCTGCTGTCCCACCGGGCTATGGTGGAGCTCCTGCAGGGAGTTCCCCTCATAATCAGCCTGCTGCC CCGGTCGGCAATACTTTTCGGTATGAGGATGTGCTGAACTCCCAGTACAAAGATACCAACCATTTGATGTCTCTGCAACAGAACGAGAATTCGGCGATGT GGCTTCAGGGGCATGGCTTGCGAACCATGTCAGCAGGCCCGGCTAACTCATATTACAACTTCCAGGGGCAGAACCAGCCACAACAGAAAAATTGA
AA sequence Show only first row Show all	>Lus10025382 pacid=23150827 polypeptide=Lus10025382 locus=Lus10025382.g ID=Lus10025382.BGIv1.0 annot-version=v1.0 MSGKGNHGGKVSNGISAITPGSRKVVQSLKEIVKCPESEIYAMLKDCDMDPNEAVNRLLTQDPFHEVKSKREKKKETKDTTDLRPRGANNVTHRGARSGS DRYGRGGSSQFRSTESSVVHGKPAYRKENGAHAYAGSTSYASATAGNNGGRRAELTRDSSGTENKAPTISAGDDFFAPAQPASGVQSAWIGNPGQVSMAD IVKMGKPQSKTSALPNHTGWAPPAHNHIHSSENGAPKESEIRNEQEASASQHLYSNNDWPATEQPSDATVSSFMEPPTDPDIYEKPSTLASLDRENEHVR SEIDEVQSEEDDLDESPVGPSSVPNIQIQEEGNAGSSLVDNDLYENINSHESNGHAFERNDAEESSSSLQQLNLHTDAKVVPPEEDNPVVIIPIIFNSRL SGPFASQSLSNNSEETSKPVEPTTVGHSDARDPEYYEDVLRNAAEDNLVHGTNINVGNYDSPSVPQPQVLKEETQEAAQGNQDPFVSSTPGYNYDNNQHL DAALRSQQSSSQLQNIAGFSSVMAYSNSLPTALLASNLPTGRESDLPYSPFPTNQSMPTKYNTNASAVNGPSISMPEALRASNISTPQPTQQSLGGAAVA AIGHTLPQHLAVHPYSQTALPLAQYTNMIGYPFLPRSYAYMPSAFQQAFPRNSTYHQSLAALLPQYKNSVSVSSLPQSAAVPPGYGGAPAGSSPHNQPAA PVGNTFRYEDVLNSQYKDTNHLMSLQQNENSAMWLQGHGLRTMSAGPANSYYNFQGQNQPQQKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29350			Kinase-related protein of unkn...		Lus10025382 [exp]	0	1
AT4G10070			KH domain-containing protein (...		Lus10003519 [exp]	1.4	0.9048
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	3.3	0.9341
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031331 [exp]	4.7	0.8889
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10031904 [exp]	4.9	0.8948
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Lus10037558 [exp]	10.2	0.8854
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	11.5	0.8629
AT1G53050			Protein kinase superfamily pro...		Lus10035892 [exp]	14.7	0.8883
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	15.0	0.8961
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Lus10014931 [exp]	18.8	0.8681
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	19.1	0.8990

Compare expression of checked genes

Lus10025382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.