Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29790 436 / 9e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G40830 206 / 1e-62 ATRAD3, ATATR S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G27230 202 / 3e-61 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G05390 191 / 2e-56 unknown protein AT4G01240 182 / 2e-51 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015264 [exp] 645 / 0 AT1G29790 504 / 1e-179 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020803 [exp] 223 / 7e-69 AT5G40830 282 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10007385 [exp] 219 / 1e-67 AT5G40830 277 / 1e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10024318 [exp] 198 / 3e-59 AT3G27230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007588 [exp] 197 / 8e-59 AT5G40830 232 / 6e-72 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10034506 [exp] 192 / 9e-57 AT3G27230 599 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010138 [exp] 189 / 1e-55 AT4G01240 620 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004494 [exp] 188 / 4e-55 AT3G05390 699 / 0.0 unknown protein Lus10033164 [exp] 190 / 1e-54 AT3G27230 451 / 3e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079000 [exp] 516 / 0 AT1G29790 439 / 2e-154 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G352700 [exp] 504 / 1e-179 AT1G29790 437 / 2e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G231100 [exp] 224 / 4e-69 AT3G05390 287 / 2e-92 unknown protein Potri.004G083800 [exp] 222 / 2e-68 AT3G05390 278 / 3e-89 unknown protein Potri.017G135100 [exp] 217 / 8e-67 AT3G05390 278 / 3e-89 unknown protein Potri.005G236600 [exp] 209 / 2e-63 AT3G27230 634 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G024800 [exp] 206 / 2e-62 AT3G27230 600 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G165300 [exp] 193 / 7e-57 AT4G01240 662 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G019400 [exp] 187 / 1e-54 AT3G05390 753 / 0.0 unknown protein Potri.004G116900 [exp] 179 / 2e-51 AT4G01240 388 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10025384 pacid=23150900 polypeptide=Lus10025384 locus=Lus10025384.g ID=Lus10025384.BGIv1.0 annot-version=v1.0 ATGGGGTTCACCTTCACTATGAGCTTAAACCTACTCCTCCTACTAGCAATGGTAGCCACAAACCTCCTCTCCCTCTACCACCTCTCATCAAACCTCCAAT CCCAAACTCCACCGCCATCCGCCTCCCACTCAATCCCAGACCACCTCCTCCGCCAGCTCAACACTATACGCGCCGCCATCACTCACCTCACGCGTCACCA ACCTCAACCTTCCTCACCCTCCGATTCTTCCTCCTCCAAATCATCAACAATCCCTCCCGATCTCCTCCTCTACGCTCACCTCTCCCCGATCGCCTCCGCC TGCCACAACCACCCCGACCTTCTCCACAAGTACATGACCTACCAGCCTTACTCCGCTTGCCCTCACGATTCCGATCTCGCCGAATCTCTAATCCTCCGTG GCTGCCACCCTCTCCCTCGCCGTCGATGCTTCGCCAGAACTCCTCAAAAGCCTCCTTCCTCCCTCCCTCGCAATCCTTTCCCTTCCAATCTCGTCGATTC GAACGTAATCTGGTCGTCGCCGAAGTACACCTGCAAGTCTTTCTCCTGTCTCGCTAAGGATCCAAATCTAGGATTCGATTTCCTTGGTACCGAGATCTCC AGATTCATGACCTACAAAACCGAGCTAGATCTCCCGATCCCGCAGCTGATTCAGATCTCGGACCGAGCCCAATCTCCGATCCGACTCGGCCTCGACATAG GGGGAGGAACGGGGACGTTCGCGGCGAGGATGAAGCAGTACAACGTGACGGTGGTGACGACGACGATGAACTTCAACGCCCCGAACAGCGAGGCGGTGGC GATGAGGGGGCTTGTGCCGATCCACACACCGCTGCAGCAGCCCGCCCGGGAGCAGCGGCTTCCCGTGTTCGACGGGGTGGTGGATCTGGTGCGGTGCGGG AGGGCGGTGAACCGGTGGATACCGACGGCGACGATGGAGTTTCTGCTGTACGATGTGGATAGAGTTCTGAGAGGCGGTGGTTATCTGTGGATGGATCATT TCTTCAGTAAAGATGTGGATTTGGGGAAGGTTTATGGACCGTTGATCGGGAAGCTGGGGTATAAGAAGGTGAAATGGGCGGTGGCGAATAAGACGGATTC CGGCGGGTTGAAGAACGGTGAAGTTTACTTGACTGCTCTGCTTCAGAAGCCCGTTTCCCGATCTGGGTTGTAG
AA sequence Show only first row Show all	>Lus10025384 pacid=23150900 polypeptide=Lus10025384 locus=Lus10025384.g ID=Lus10025384.BGIv1.0 annot-version=v1.0 MGFTFTMSLNLLLLLAMVATNLLSLYHLSSNLQSQTPPPSASHSIPDHLLRQLNTIRAAITHLTRHQPQPSSPSDSSSSKSSTIPPDLLLYAHLSPIASA CHNHPDLLHKYMTYQPYSACPHDSDLAESLILRGCHPLPRRRCFARTPQKPPSSLPRNPFPSNLVDSNVIWSSPKYTCKSFSCLAKDPNLGFDFLGTEIS RFMTYKTELDLPIPQLIQISDRAQSPIRLGLDIGGGTGTFAARMKQYNVTVVTTTMNFNAPNSEAVAMRGLVPIHTPLQQPAREQRLPVFDGVVDLVRCG RAVNRWIPTATMEFLLYDVDRVLRGGGYLWMDHFFSKDVDLGKVYGPLIGKLGYKKVKWAVANKTDSGGLKNGEVYLTALLQKPVSRSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	0	1
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	1.4	0.9466
AT3G44150			unknown protein		Lus10016181 [exp]	2.4	0.9316
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	3.2	0.9359
AT1G27970		NTF2B	nuclear transport factor 2B (....		Lus10037033 [exp]	5.1	0.8985
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031845 [exp]	5.3	0.9183
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	6.8	0.8802
AT4G22580			Exostosin family protein (.1)		Lus10028924 [exp]	7.3	0.9128
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	7.4	0.9162
AT3G06150			unknown protein		Lus10034027 [exp]	7.5	0.8721
AT3G10290			Nucleotide-sugar transporter f...		Lus10018043 [exp]	8.0	0.8695

Compare expression of checked genes

Lus10025384 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.