Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 271 / 6e-77 PHD finger transcription factor, putative (.1) AT3G14980 217 / 2e-58 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 194 / 8e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G36740 192 / 2e-50 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 189 / 2e-49 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT4G14920 187 / 8e-49 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G63900 161 / 8e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 116 / 2e-26 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G53680 114 / 8e-26 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 112 / 3e-25 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015266 [exp] 1238 / 0 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10025387 [exp] 1194 / 0 AT5G58610 428 / 5e-132 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 544 / 1e-173 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10012522 [exp] 332 / 7e-103 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10015250 [exp] 252 / 8e-78 AT5G58610 137 / 6e-37 PHD finger transcription factor, putative (.1) Lus10018681 [exp] 228 / 3e-63 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 223 / 1e-61 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10006110 [exp] 190 / 1e-49 AT4G14920 868 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10042602 [exp] 188 / 7e-49 AT5G36740 607 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 360 / 6e-108 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 292 / 2e-85 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 198 / 5e-52 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 189 / 3e-49 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 181 / 2e-46 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 176 / 2e-46 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.005G211100 [exp] 167 / 3e-42 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 162 / 1e-40 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.016G097300 [exp] 135 / 2e-32 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.006G120200 [exp] 129 / 3e-30 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10025386 pacid=23150899 polypeptide=Lus10025386 locus=Lus10025386.g ID=Lus10025386.BGIv1.0 annot-version=v1.0 ATGGGCTCCGGAAATGCCGGGAAGAAGAACAAGATGCGTCGACGCCTTAAGAAATTGCTTCATCTCCCTGACAGAGTCGAGGTAAGAAGCGAAGATGAAG GGTTTGAAGGTTCATGGCACGAGGGAACTGTAACTGGACGTAGAAAGATAGGCTCCTCTGCCAAATTCGAAATCGAGTTTGATCACTTCCTTGATGTTGA TGTGGTTACTGTTTCCCTAGTGGTGTCTGATGATGAACAACTCTCTAGTACTCGTGGATGCATCAGACCATTCCCGCCTGAATTCACAACAATAAACGAA TACATGCTTCCATTCGGATTATGTGTTGATGTGAATTGCAACAACAAAGGATGGCGGGAAGGGGTGGTTTTCGACTACGAAGGTGGTTCGAACCAGAGGA CGGTTTTCTTCCCCGACGTTGGAGACGAGAAGGTGGTTCCGGTTGGCGAGCTTAGGATCACTCAGGACTGGGGCGAAGTGTCGGGGAAGTGGAATCGTCG AGGGATGTGGCTGTTTCTTGATCTAATCGAGGAGTATATAGGGAAAGGTGGTCGGATTCCGGTCTCTATCAAGCAACTTTGGTATGACTTGCGCCACAAG AAAGGGTTTCGGAACATTGGAGGAGGAGATTGGACTTGCTCTTCCAGGCCTGTATGGGAAGAGCTCGTTTCGGATACGGTTTGTCGCAATCTTGAACTCG TCTCCGATCGTCTCTTTTGTGAATTAAGCCTTCCAGATGGTGCTCGAAAGCTATCGGAGCTGGCTAAGTCGGTTAATTCGGAAACTGATAATGCTGACTC AGACTCTAAGCTGCAACAACTTTTGTTGACTGAGAAGTCAACTCCAGAAAGGGATGAACTTTGTGTTGAAGTGGTACAAATGGCCTCACTAAGCGGCGAG ATAGTAGAAACAGTTTCTAGTTCGAGCGCCATGGAAATCAAAAGCTGCGACCTTGATCAAGCTAATAATTCAAGCAGCCATGACGGAAAGTGTTATTACT CACTCAAACAGGTTTGTAGGATTCTGGTGAAGTCTGAGGGTACAAAGAATCCTCCTTTGAGTTATTCTCGTTACGAATGCCCTAAAGCGATTGTGGACTG TTACAAGGTATCCTGCGCGGGGGGAGCCAGTAAAAATTCAGATATGATCAAGCGAGCGAAGGAGAACCTTAAGGCTATCGGGTGGAGCATAGAGGAGAAG TTGCTTGGCAGTGGAAGGCGTGTGAAGGTGTTTAAGTCGCCTGGGGGGCAGTCTTACATTTCACTTAGGATGGCTTGTCAAAGATGTATGAATGAAACTG ATACATCAGTTGCTTCTAAGCCTATCAGACTAGAGAGGAAGAGTACTAGTGGGGATATTAGAAGAAGCCAAAGAGGAAAAAAACATCAAACAGGAGCTCA ACAGGACGTCGTCGTAAAAATTCGCACCCCCCTTCCAAAATCTAGAAGTAGGAAGACGGCTGAAATGTATAGTAGGGTAGCAGACATGAAGAGGCTTACT CAACCTAAGCATCTACGATCAAGCAAAAGAGTGAAGCTTACGCCGAAGAAATCATCAGGCGGCCATCCTTTGACAATGGTGTCTTGGTTGATAGATAACA ATACCATCTTGCCAAGGGATAAAGTATATTACAGGACAAGTAAGGGTGGCGATGATGGTGATTCGAATCCAAAAGGGAGAATAACTCGGGAAGGAATCAA GTGTTTCTGTTGTATGAAGGTAATGCGCCATGGGAAGGAGATGAATTTGAAAGAAGCCAAACCACTGAATAGAATGAAGGGTAGACGTGACGGTGAAAAC GACGACGTATGTTCTGTCTGTCAGTATGGTGGAGATCTAGTCTTGTGTGATCAGTGTCCTTCCTCTTTCCACGGTGGTTGCCTTGGTATGCAAGATGTTC CGCCCGGGGACTGGTTCTGCCCTTCGTGTTGCTGCAGAATTTGCAAGCGAAAGCAAGTTCGCAAAGACAGTGAGAGCTTCTTGGACGAGAGTGTCTCAAA TGCACCCAATGCCAATCACATTACATGCCTGAAGAACAATGGAGTAGGAAAGAAGTATCTTGTTGATAAAGAAGGAAACTGGTTTTGTGGGAAGAACTGT ACAAGGATATTCGCTGACCTCTCCGCTCATTTGGGAATACCGATTCCGGCTGGTGTGAATGACCTTACTTGCACACTGCAAAAGTCTGCATCAGAGTCTG ATGGAAGAACAGCATTTGGTGTTGCTCCCGACATTGAGGCTGAAGCTCAGAGCTACATGAAACTTGGCATTGCTCTTGACGTGATCCACGAGTGTTTCGA GCCTCTCAAAGAATCCCGCACTGGAAGAGATGTCGTGAGTGATGTTATCTTCAGTCAAAGGTCGAAAATCAGACGCCTCGACTTTCGAGGCTTCTATACT GTGCTCTTGGAGAAAGACGATGAAGTCATTAGCGTCGCAACTATAAGAATCTTTGGAGACAATGTGGCTGAAGTACCTCTAGTTGCGACAAGGCATCAGT ATCGTCAACGCGGAATGTGTCGCATACTAATGAATGTGATTGAAAAGGTAGTTCCGAAATCCTTGTAG
AA sequence Show only first row Show all	>Lus10025386 pacid=23150899 polypeptide=Lus10025386 locus=Lus10025386.g ID=Lus10025386.BGIv1.0 annot-version=v1.0 MGSGNAGKKNKMRRRLKKLLHLPDRVEVRSEDEGFEGSWHEGTVTGRRKIGSSAKFEIEFDHFLDVDVVTVSLVVSDDEQLSSTRGCIRPFPPEFTTINE YMLPFGLCVDVNCNNKGWREGVVFDYEGGSNQRTVFFPDVGDEKVVPVGELRITQDWGEVSGKWNRRGMWLFLDLIEEYIGKGGRIPVSIKQLWYDLRHK KGFRNIGGGDWTCSSRPVWEELVSDTVCRNLELVSDRLFCELSLPDGARKLSELAKSVNSETDNADSDSKLQQLLLTEKSTPERDELCVEVVQMASLSGE IVETVSSSSAMEIKSCDLDQANNSSSHDGKCYYSLKQVCRILVKSEGTKNPPLSYSRYECPKAIVDCYKVSCAGGASKNSDMIKRAKENLKAIGWSIEEK LLGSGRRVKVFKSPGGQSYISLRMACQRCMNETDTSVASKPIRLERKSTSGDIRRSQRGKKHQTGAQQDVVVKIRTPLPKSRSRKTAEMYSRVADMKRLT QPKHLRSSKRVKLTPKKSSGGHPLTMVSWLIDNNTILPRDKVYYRTSKGGDDGDSNPKGRITREGIKCFCCMKVMRHGKEMNLKEAKPLNRMKGRRDGEN DDVCSVCQYGGDLVLCDQCPSSFHGGCLGMQDVPPGDWFCPSCCCRICKRKQVRKDSESFLDESVSNAPNANHITCLKNNGVGKKYLVDKEGNWFCGKNC TRIFADLSAHLGIPIPAGVNDLTCTLQKSASESDGRTAFGVAPDIEAEAQSYMKLGIALDVIHECFEPLKESRTGRDVVSDVIFSQRSKIRRLDFRGFYT VLLEKDDEVISVATIRIFGDNVAEVPLVATRHQYRQRGMCRILMNVIEKVVPKSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10025387 [exp]	1.0	0.8741
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	2.4	0.8413
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	2.4	0.8564
AT3G12620			Protein phosphatase 2C family ...		Lus10023470 [exp]	2.8	0.8360
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	9.5	0.8167
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	15.2	0.7821
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	19.7	0.8054
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10011917 [exp]	23.2	0.8178
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10032424 [exp]	27.5	0.8251
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	29.5	0.7806

Compare expression of checked genes

Lus10025386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.