Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58610 410 / 3e-125 PHD finger transcription factor, putative (.1) AT5G63900 177 / 1e-46 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G14980 175 / 2e-44 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT1G05380 172 / 3e-43 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) AT5G36740 167 / 7e-42 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT4G14920 162 / 3e-40 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) AT5G36670 131 / 9e-31 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G27980 112 / 1e-24 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G37520 109 / 5e-24 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT2G36720 105 / 8e-23 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015266 [exp] 1199 / 0 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10025386 [exp] 1164 / 0 AT5G58610 271 / 4e-77 PHD finger transcription factor, putative (.1) Lus10012522 [exp] 367 / 7e-114 AT5G58610 285 / 4e-84 PHD finger transcription factor, putative (.1) Lus10042283 [exp] 340 / 2e-97 AT3G08590 993 / 0.0 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2, Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (.1.2) Lus10015250 [exp] 270 / 4e-83 AT5G58610 137 / 6e-37 PHD finger transcription factor, putative (.1) Lus10026374 [exp] 210 / 4e-58 AT3G14980 177 / 2e-47 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Lus10018681 [exp] 189 / 2e-49 AT5G58610 308 / 1e-90 PHD finger transcription factor, putative (.1) Lus10007741 [exp] 185 / 5e-48 AT5G58610 323 / 4e-96 PHD finger transcription factor, putative (.1) Lus10025385 [exp] 147 / 1e-41 ND 37 / 7e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G072600 [exp] 338 / 1e-97 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1) Potri.002G118600 [exp] 254 / 2e-70 AT5G58610 436 / 5e-137 PHD finger transcription factor, putative (.1) Potri.001G392801 [exp] 164 / 7e-41 AT3G14980 620 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.010G087700 [exp] 154 / 1e-37 AT4G14920 805 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.002G051400 [exp] 149 / 3e-36 AT5G36740 625 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.008G152600 [exp] 148 / 7e-36 AT4G14920 769 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.005G211100 [exp] 142 / 5e-34 AT5G36740 635 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1) Potri.001G153200 [exp] 137 / 3e-33 AT1G05380 340 / 1e-104 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (.1.2) Potri.006G120200 [exp] 120 / 2e-27 AT2G36720 848 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Potri.016G097300 [exp] 115 / 7e-26 AT2G36720 830 / 0.0 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10025387 pacid=23150823 polypeptide=Lus10025387 locus=Lus10025387.g ID=Lus10025387.BGIv1.0 annot-version=v1.0 ATGGGCTCCGGAACCGCCGGGAAGAAGAACAAGATGCGTCGACGCCTCAAGAAATTGCTTCATCTCCCTGACAGAGTCGAGGTAAGAAGCGAAGATGAAG GGTTTGAAGGTTCATGGCACGAGGGAACTGTAACTGGACGTAGAAAGATAGGCTCCTCTGCCAAATTCGAAATCGAGTTTGATCACTTCCTTGATGTTGA TGTGGTTACTGTTTCCCTAGTGGTGTCTGATGATGAACAACTCTCTAGTACTCGTGGATGCATCAGACCTTTCCCGCCTGAATTCACAACAATAAATGAA TACATTCTTCCATTCGGATTATGTGTTGATGTGAATTGCAACAACAAAGGATGGCGGGAAGGGGTGGTTTTCGACTACGAAGATGGTTCGAACCAGAGGA AGGTTTTCTTCCCTGACATTGGCAACGAGATTGTGGTTTCGGTTGGCGAGCTGAGGATCACTCAGGACTGGGACGAAGTATCAGGGAAGTGGAACCATCG AGGGATGTGGCTGTTTCTTGATCTAATCGAGGAGTATATAGGGAAAGGTGGTCGGATTCCGGTCTCTATCAAGCAACTTTGGTATGACTTGCGCCACAAG AAAGGGTTTCGGAACATTGGAGGAGGAGATTGGACTTGCTCTTCCAGACCTGTATGGGAAGAGCTCGTTTCGGATACGGTTTGTCGCAATCTTGAACTCG TCTCCGATCGTCTCTTTTGTGAATTAAGCCTTCCAGATGGTGCTCGAAAGCTATCGGAGCTGGCTAAGTCGGTTAATTCGGAAACTGATAATGCTGACTC AGACTCTAAGCTGCAACAACTTTTGTTGACTGAGACGTCAACTCCAGAAAGGGATGAACTTTGTGTTGAAGTGGTACAAATGGCCTCACTAAGCGGCGAG ATAGTAGAAACAGTTTCTAGTTCGAGCGCCATGGAAATCAAAAGCTGCGACCTTGATCAAGCTAATAATTCAAGCAGCCATGGTAGATCAGACTCTAAGC TGCCACAACCCCTGATTGAGAACTCCATTCCAGAAGGGGATGAAGTTTCTACTTCTAGTGCCATGGAAACTGAAAGATGCGACCTTTTGACTCCATCGCT CCGAAAGAACCAAAAGTTTCGCTGGCTACCTGCAGGGGCAGACATGGTTCAGGAACCCAAATACTGCCCGGAGGCTATTGTGAAATATGCACAAGGCAGT CGAGAAATGGTTGCAAAGGCTAAGCAGCATCTCTTATATTTGGAATGGAACATTCAGTATTACATGGATGAACATAAAAGACCTAGATTCCACTTTATAT CACCAGACGGAAAGTGTTATTACTCACTCAAGCAGGTTTGTAGGATTCTGGTGAAGTCTGAGGGTACAAAGAATCCTCCTTTGAGTGATTCTCGTTACGA ATGCCCTAAAGCGATTGTGGACTGTTACAAGGTATCCTGCGCGGGGGGAGCCAGTAAAAATTCAGATGTGATCAAGCGAGCGAAGGAGAACCTTAAGGCT ATGGGGTGGAGCATAGAGGAGAAGTTGCTTGGCAGTGGAAGGCGTGTGAAGGTGTTTAAGTCGCCTGGGGGGCAGTCTTACATTTCACTTAGGATGGCTT GTCAAAGATGTATGAATGAAACTGATACATCAGTTGCTTCTAAGCCTATCAGACTAGAGAGGAAGAGTACTAGTGGGGATATTAGAAGAAGCCAAAGAGG AAAAAATCATCAAACAGGAGCTCAACCGGACGTCGTCGTAAAAATTCGCACCCCCCTTCCGAAATCTAGAAGTACGAAGACGGCTGAAATTTATAGTAGG GTAGCAGACATGAAGAAGCTTACTCAACCTAAGCATCTACGATCGAGCAAAAGAGTGAAGCTTACGCCGAAGAAATCATCAGGCGGCCATCCTTTGACAA TGGTGTCTTGGTTGATAGATAACAATACCATCTTACCAAGGGATAAAGTATATTACAGGACAAGTAAGGGTGGCGATGATGGTGATTCGAAGCCAAAAGG GAGAATAACTCGGAAAGGAATCAAGTGTTTCTGTTGTATGAAGGTTTTCTCTCTTAGTAGCTTTGAAATTCATGTAGGCAATAAATACAACAGAAACTAC CACCATGGACCAAGGATCAGTGTCCTTCCTCTTTCCACGGTGGTTGCCTTGGTATGCAAGATGTTCCGCCCGGGGACTGGTTCTGCCCTTCGTGTTGCTG CAGAATTTGCAAGCGAAAGCAAGTTCGCAAAGACAGTGAGAGCTTCTTGGACGAGAGTGTTCTCAAATGCACCCAATGCCAATCACATTACATGCCTGAA GAACAATGGAGTAGGAAAGAAGTATCTTGTTGATAAAGAAGGAAACTGGTTTTGTGGGAAGAACTGTACAAGGATATTCGCTGACCTCTCCGCTCATTTG GGAATACCGATTCCGGCTGGTGTGAATGACCTTACTTGCACACTGCAAAAGTCTGCATCAGAGTCTGATGGAAGAACAGCATTTGGTGTTGCTCCCGACA TTGAGGCTGAAGCTCAGAGCTACATGAAACTTGGCATTGCTCTTGACGTGATCCACGAGTGTTTCGAGCCTCTCAAAGAATCCAGCACTGGAAGAGATGT CGTGAGTGATGTTATCTTCAGTCAAAGGTCGAAAATCAGACGCCTCGACTTTCGAGGCTTCTATACTGTGCTCTTGGAGAAAGACGATGAAGTCATTAGC GTCGCAACTATAAGAATCTTTGGAGACAATGTGGCTGAAGTACCTCTAGTTGCGACAAGGCATCAGTATCGTCAACGCGGAATGTGTCGCATACTAATGA ATGTGATTGAAAAGAAGCTGACTGAACTAGGTGTTAAGCGGCTAGTTCTACCTGCTGTTCCTAGCATGTTAAATACATGGACTGGTTCATTTGGGTTCTC AAAGGTTACAGATTCGGAAAGATTGCAGTTTGTGGATACCGTTTTCTTGAACTTTCCAGGCACCATCATGTGTCACAAACTGTTGACCACCACCAATGAA TCACGTCCATTGAAGAAAGAAATCCCATCATTGCCTAACTCTGGAAATGGTGAAGAAATGGAGCTGGAGCTTGATGGGTCACCCAGCCTGGAATCTGAAA AGGTTCAAGCTGAGAGAACAGAGCAACAGGGAGCACCATTAGCAAAAGAACATTCACCAATTGGCTCGAAACCAGAACAGCAGCAACCTTCTACTCCAAT GGAAGACTGTAGCAAAGCTGAGACTGACTGCAGCTCTGGTTCGAGTCGGCTCACTCCAAGGAAGCCAAGTCGGTATTGGGACTATGGTTTGTTTAAGTAC CACAGAAGGATGAAGAGGAAGATATGTAAGTAA
AA sequence Show only first row Show all	>Lus10025387 pacid=23150823 polypeptide=Lus10025387 locus=Lus10025387.g ID=Lus10025387.BGIv1.0 annot-version=v1.0 MGSGTAGKKNKMRRRLKKLLHLPDRVEVRSEDEGFEGSWHEGTVTGRRKIGSSAKFEIEFDHFLDVDVVTVSLVVSDDEQLSSTRGCIRPFPPEFTTINE YILPFGLCVDVNCNNKGWREGVVFDYEDGSNQRKVFFPDIGNEIVVSVGELRITQDWDEVSGKWNHRGMWLFLDLIEEYIGKGGRIPVSIKQLWYDLRHK KGFRNIGGGDWTCSSRPVWEELVSDTVCRNLELVSDRLFCELSLPDGARKLSELAKSVNSETDNADSDSKLQQLLLTETSTPERDELCVEVVQMASLSGE IVETVSSSSAMEIKSCDLDQANNSSSHGRSDSKLPQPLIENSIPEGDEVSTSSAMETERCDLLTPSLRKNQKFRWLPAGADMVQEPKYCPEAIVKYAQGS REMVAKAKQHLLYLEWNIQYYMDEHKRPRFHFISPDGKCYYSLKQVCRILVKSEGTKNPPLSDSRYECPKAIVDCYKVSCAGGASKNSDVIKRAKENLKA MGWSIEEKLLGSGRRVKVFKSPGGQSYISLRMACQRCMNETDTSVASKPIRLERKSTSGDIRRSQRGKNHQTGAQPDVVVKIRTPLPKSRSTKTAEIYSR VADMKKLTQPKHLRSSKRVKLTPKKSSGGHPLTMVSWLIDNNTILPRDKVYYRTSKGGDDGDSKPKGRITRKGIKCFCCMKVFSLSSFEIHVGNKYNRNY HHGPRISVLPLSTVVALVCKMFRPGTGSALRVAAEFASESKFAKTVRASWTRVFSNAPNANHITCLKNNGVGKKYLVDKEGNWFCGKNCTRIFADLSAHL GIPIPAGVNDLTCTLQKSASESDGRTAFGVAPDIEAEAQSYMKLGIALDVIHECFEPLKESSTGRDVVSDVIFSQRSKIRRLDFRGFYTVLLEKDDEVIS VATIRIFGDNVAEVPLVATRHQYRQRGMCRILMNVIEKKLTELGVKRLVLPAVPSMLNTWTGSFGFSKVTDSERLQFVDTVFLNFPGTIMCHKLLTTTNE SRPLKKEIPSLPNSGNGEEMELELDGSPSLESEKVQAERTEQQGAPLAKEHSPIGSKPEQQQPSTPMEDCSKAETDCSSGSSRLTPRKPSRYWDYGLFKY HRRMKRKICK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58610			PHD finger transcription facto...		Lus10025387 [exp]	0	1
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	1.0	0.8741
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	4.2	0.8229
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Lus10034197 [exp]	9.2	0.8232
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10003663 [exp]	11.2	0.7895
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	12.0	0.8432
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10003517 [exp]	12.8	0.8333
					Lus10025385 [exp]	14.1	0.7833
AT3G61180			RING/U-box superfamily protein...		Lus10012427 [exp]	14.1	0.8247
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	21.0	0.8218
					Lus10026168 [exp]	21.7	0.7685

Compare expression of checked genes

Lus10025387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.