Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 57 / 2e-09 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 50 / 3e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 49 / 5e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 47 / 6e-06 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 44 / 3e-05 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015266 [exp] 347 / 1e-109 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10000368 [exp] 105 / 5e-26 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10039303 [exp] 102 / 2e-24 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 71 / 8e-14 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027543 [exp] 71 / 1e-13 AT3G18990 63 / 2e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015248 [exp] 67 / 4e-13 AT4G33280 50 / 3e-07 AP2/B3-like transcriptional factor family protein (.1) Lus10025507 [exp] 62 / 5e-11 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 53 / 6e-08 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10036045 [exp] 53 / 7e-08 AT3G18990 110 / 2e-27 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 67 / 2e-12 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 59 / 3e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 53 / 6e-08 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 48 / 2e-06 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 47 / 5e-06 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 45 / 2e-05 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 45 / 3e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.018G124501 [exp] 42 / 3e-05 AT3G18990 59 / 3e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 42 / 0.0003 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10025388 pacid=23150832 polypeptide=Lus10025388 locus=Lus10025388.g ID=Lus10025388.BGIv1.0 annot-version=v1.0 ATGCCAAGTGAAAGTGGCGATAAGGGGGGTAAAATGTGGTTCGACGAGGGTTGGAGAGAGTTCGCCGCATTCTACTCCATAGCACCTGACCACCTTCTGG CTTTTCAGTACCATGGACATGGTAATTTCCATGTGTTCATATTCACAGAAATTGTGTACAGAACCCAGCTGCCAGAGCCAGATGTGCACGTTAAGTTAGA GTGTGGAGCTGATTCGTATGGTGAAATTTTTCCTTCCCCTAAAACAAGGGATAAACGGCCGTTGGAATCTCTTCCACCTCCTCCTAGTAAGCTGAGAAGA ACAACACTGAACAGTGATCGCCGTTTAGGAGAGTATCTTGGACATGAGGGTTTAAATCACGATCTTGGTGGAGCTTCTTGGAAGAGAAAACTGATAACAT TTGCTGGTGGAGAAACAACTAGTTGTCTTGCTAGAGCTACTGCTGCTTTCAAGTCTGAGAATCCTTTCATCATGAAAGTTGTGCAGCCATCATATTTCAC CGCTGGATCGAAATCGCTGTTTCTGCCATCAAGCTTCTTCTTGGAGAATTTCAAGGATAAAAGTGGAGACATCTTCCTCCGCGTTCTTGGTGGGAACACC TGGAAGGTTAAGTACTCTGTCTATGGGAAGAAAGCAGCAGTCTTTACAGCCAAAACTTGGGGTGCATTTGCACGAGACAACGGTTTGAAACTTGACGACG TCTGTGCATTCGAGGTTCCAAAAAAATGTGAAACTAAGGAGCCTACGTTGAATGTGGTCATCTTCCATGCTGCCTGA
AA sequence Show only first row Show all	>Lus10025388 pacid=23150832 polypeptide=Lus10025388 locus=Lus10025388.g ID=Lus10025388.BGIv1.0 annot-version=v1.0 MPSESGDKGGKMWFDEGWREFAAFYSIAPDHLLAFQYHGHGNFHVFIFTEIVYRTQLPEPDVHVKLECGADSYGEIFPSPKTRDKRPLESLPPPPSKLRR TTLNSDRRLGEYLGHEGLNHDLGGASWKRKLITFAGGETTSCLARATAAFKSENPFIMKVVQPSYFTAGSKSLFLPSSFFLENFKDKSGDIFLRVLGGNT WKVKYSVYGKKAAVFTAKTWGAFARDNGLKLDDVCAFEVPKKCETKEPTLNVVIFHAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10025388 [exp]	0	1
AT2G38180			SGNH hydrolase-type esterase s...		Lus10027790 [exp]	7.5	0.6479
					Lus10020449 [exp]	9.4	0.6235
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010676 [exp]	12.9	0.6770
AT1G53710			Calcineurin-like metallo-phosp...		Lus10042935 [exp]	17.6	0.6555
AT3G59490			unknown protein		Lus10013685 [exp]	30.2	0.6478
AT1G11340			S-locus lectin protein kinase ...		Lus10007601 [exp]	31.4	0.6354
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10012502 [exp]	32.9	0.6404
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10043289 [exp]	35.3	0.6453
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10009746 [exp]	39.4	0.5408
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002937 [exp]	41.9	0.6188

Compare expression of checked genes

Lus10025388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.