Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46280 1038 / 0 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT4G02060 348 / 2e-108 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 329 / 2e-101 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G16440 328 / 7e-100 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 322 / 8e-97 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 311 / 1e-93 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT3G09660 258 / 3e-74 MCM8 minichromosome maintenance 8 (.1) AT2G14050 234 / 7e-67 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015267 [exp] 1413 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10001452 [exp] 329 / 3e-101 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 323 / 4e-99 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10028795 [exp] 321 / 4e-97 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 329 / 1e-96 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10017491 [exp] 311 / 9e-94 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009683 [exp] 318 / 3e-92 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 297 / 3e-88 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 295 / 1e-87 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131600 [exp] 1176 / 0 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.014G121000 [exp] 335 / 8e-104 AT4G02060 1255 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 334 / 3e-103 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.009G121500 [exp] 333 / 1e-101 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G188700 [exp] 327 / 1e-100 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G070500 [exp] 332 / 3e-100 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.001G074000 [exp] 312 / 8e-94 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.006G131900 [exp] 274 / 3e-80 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 234 / 2e-66 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 69 / 3e-14 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00493 [flax] [poplar] MCM MCM P-loop domain
Representative CDS sequence Show only first row Show all	>Lus10025389 pacid=23150905 polypeptide=Lus10025389 locus=Lus10025389.g ID=Lus10025389.BGIv1.0 annot-version=v1.0 ATGGCGAACTACGATGACCGGAGCAGCCATAAGCGAGCTTTCCTCGATTTCCTTGACCAAAATGTATACAAGAACGAGATCAAGACCATGATCGATCAGA AGCGCCGCCGCCTCATTGTCAACATCTCCGATCTTCACTCTTTCCAAGACTTCGGTTCCAGGATATTGAAGAATCCAACCGAGTATATGCAACCGTTCTG CGACGCAGCCACTGAAGTTGCTCGAAGTATCGATCCGCAGTTCTTGAAGGAAGGAGAGGAAGTTCATGTCGGTTTCGAGGGAGCATTCGTGTCTCGACGT GTCTCTCCTAGAGAGCTTCTCTCTGAGTACATAGGCTCAATGGTTTGCGTTGAAGGCATTGTCACAAAATGTTCTCTAGTTAGACCGAAGGTGGTGAAGA GCGTTCATTTCTGCCCTACAACTGGAGAACTCACATCTCGCGAGTATCGAGATATCACCTCGAATGTAGGCTTGCCTACAGGATCGGTGTATCCCACAAG GGATGAGAATGGCAACCTATTGGTAACTGAATATGGCATGTGCACGTATAAAGATCACCAGACGTTATCAGTGCAAGAAATGCCTGAGAATTCTGCTCCT GGTCAGCTCCCACGAACGCTGGATGTCATCGTCGAGGATGATCTTGTCGATTCATGTAAGCCTGGAGATAGGGTGGCCATTGTCGGTGTGTACAAAGCAC TTGCTGGGAAGACCAAGGGAAGTGTTAATGGAGTATTTAGGACTATTGTTGTGGCGAATAATGTTTCCCTCCTCAACAAATTGGCGAATTCTCCAATTTA CAGTACTGATGATATTAGGGAGATTAAAAAGATAGCTGAAAGAGCTGATGTGTTTGACCTACTGGGTAACTCACTTGCACCTTCAATATTTGGGCATTCA TGGATAAAGAAGGCTGTGGTTTTGCTGATGGTAGGCGGAGTTGAAAAGAATTTGGACAACGGCACCCACTTGAGAGGTGACATTAACATGATGATGGTTG GCGATCCATCTGTTGCGAAATCACAGCTACTCCGAGCAATCATTAATATAGCTCCTTTGGCAATATCGACCACTGGTCGTGGGTCTTCTGGTGTGGGGTT GACAGCTGCTGTAACTTCTGATCAAGAAACAGGAGAAAGAAGGCTTGAAGCCGGAGCCATGGTTCTTGCTGACCGAGGTGTTGTATGTATTGATGAATTT GACAAGATGAACGATCAGGATCGTGTCGCCATTCATGAAGTTATGGAGCAGCAGACTGTAACTATTGCAAAAGCTGGGATCCATGCATCACTCAATGCTA GATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGACCGCTCGCTGACTCCTACGAAGAATATAGGCCTCCCAGACTCTTTGCTTTCTCG GTTTGATTTGCTTTTCATAGTATTGGATCAAATGGACCCTGAGATTGACCGTCACATCTCAGAGCATGTCTTGAGGATGCATCGATACCGTTCTGCAAGT GATTCAGGTGATGCAGCAGCTGATGCTCGTGGAACATATGACAAAGAAGAGGAGGATGACGCAGACAAATCCATCTACGTCAAGCATAACCGAATGCTCC ATGGGAAGAGAACTGACAGGAGACCAAAAAAGGATACACTTAAGATAAACTTTCTTAAGAAATATATTCACTATGCAAAGCACAGGTTCCAGCCTAAGCT GACTGATGAGGTTGATATATCTCTTGCCATGATTTCTTTTTTATCACGTTACTTAGAGAAAACCCCTGTGGTAGTAGTCCTCACACCCTTTGGTATTCAG GCGTCCGAGCAAATTGCAACAGCTTATGCTGAACTGAGAAATTCTGGAACGACAACTCAGACGGGAGGAACCCTTCCAATCACTGCAAGAACATTAGAAA CAATAATCCGTCTCTCTGCTGCCCATGCGAAGTTGAAATTGAGTAGTCAGGTTACCAAGACTGATGTCGATGCTGCTCTCAAAGTTCTCAACTTCGCCAT ATACCATCAAGAACTAACGGATATGGACAATCGTGAACACGAAAGGGAGATGGAAGCTGAGAGAGAAAATAGAGCCCAACGTCGTCGATCGGGTAGGACC ACAGGAGATGATGATCAAGCTCCTACTGATGCTGGCAGAGAAGACCCTGCGGTGGATGCCATGGACGTGGATGACCCTCCAACGGAGCAAACCTCTACTG AGTTATCAAAAGAAAGGATCGAGGCATTCAACTCGGCCTTTCTACAATGTATGCGGTACCAGCAGAGCATAACCATAGACGACCTGGAGAGGACAGTCAA TACTGGAGCCACACAATACACAAGGCCAGAGATCATGCTTCTGCTACAGAAACTGCAAGATGACAATAGAGTGATGATAGCCGAGGCCGATGGGAAGGTT CATTTGGTTTGA
AA sequence Show only first row Show all	>Lus10025389 pacid=23150905 polypeptide=Lus10025389 locus=Lus10025389.g ID=Lus10025389.BGIv1.0 annot-version=v1.0 MANYDDRSSHKRAFLDFLDQNVYKNEIKTMIDQKRRRLIVNISDLHSFQDFGSRILKNPTEYMQPFCDAATEVARSIDPQFLKEGEEVHVGFEGAFVSRR VSPRELLSEYIGSMVCVEGIVTKCSLVRPKVVKSVHFCPTTGELTSREYRDITSNVGLPTGSVYPTRDENGNLLVTEYGMCTYKDHQTLSVQEMPENSAP GQLPRTLDVIVEDDLVDSCKPGDRVAIVGVYKALAGKTKGSVNGVFRTIVVANNVSLLNKLANSPIYSTDDIREIKKIAERADVFDLLGNSLAPSIFGHS WIKKAVVLLMVGGVEKNLDNGTHLRGDINMMMVGDPSVAKSQLLRAIINIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEF DKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPEIDRHISEHVLRMHRYRSAS DSGDAAADARGTYDKEEEDDADKSIYVKHNRMLHGKRTDRRPKKDTLKINFLKKYIHYAKHRFQPKLTDEVDISLAMISFLSRYLEKTPVVVVLTPFGIQ ASEQIATAYAELRNSGTTTQTGGTLPITARTLETIIRLSAAHAKLKLSSQVTKTDVDAALKVLNFAIYHQELTDMDNREHEREMEAERENRAQRRRSGRT TGDDDQAPTDAGREDPAVDAMDVDDPPTEQTSTELSKERIEAFNSAFLQCMRYQQSITIDDLERTVNTGATQYTRPEIMLLLQKLQDDNRVMIAEADGKV HLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	0	1
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	1.0	0.9837
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10036244 [exp]	1.4	0.9798
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	3.5	0.9765
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10010010 [exp]	3.5	0.9710
AT1G26330			DNA binding (.1.2)		Lus10000645 [exp]	3.9	0.9707
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	4.9	0.9697
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Lus10001742 [exp]	5.8	0.9462
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10011840 [exp]	6.2	0.9626
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	6.5	0.9706
AT5G48600		ATSMC4, SMC4, A...	ARABIDOPSIS THALIANA STRUCTURA...		Lus10005240 [exp]	6.5	0.9707

Compare expression of checked genes

Lus10025389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.