Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46290 765 / 0 KAS1, KAS I, KASI KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) AT1G74960 464 / 4e-160 ATKAS2, KAS2, FAB1 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) AT2G04540 265 / 1e-83 Beta-ketoacyl synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015267 [exp] 867 / 0 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10040883 [exp] 818 / 0 AT5G46290 809 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10001814 [exp] 682 / 0 AT5G46290 714 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10003195 [exp] 676 / 0 AT5G46290 717 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10004935 [exp] 601 / 0 AT5G46290 606 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Lus10034886 [exp] 486 / 4e-168 AT1G74960 821 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10033422 [exp] 450 / 8e-156 AT1G74960 716 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Lus10014622 [exp] 271 / 1e-85 AT2G04540 701 / 0.0 Beta-ketoacyl synthase (.1) Lus10033810 [exp] 257 / 1e-79 AT2G04540 705 / 0.0 Beta-ketoacyl synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079700 [exp] 794 / 0 AT5G46290 779 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.004G131500 [exp] 790 / 0 AT5G46290 795 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.001G088700 [exp] 686 / 0 AT5G46290 659 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.003G142000 [exp] 664 / 0 AT5G46290 668 / 0.0 KETOACYL-ACP SYNTHASE 1, 3-ketoacyl-acyl carrier protein synthase I (.1.2.3) Potri.006G138000 [exp] 482 / 3e-167 AT1G74960 714 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.018G062900 [exp] 472 / 6e-163 AT1G74960 715 / 0.0 ARABIDOPSIS BETA-KETOACYL-ACP SYNTHETASE 2, fatty acid biosynthesis 1 (.1.2.3) Potri.002G219500 [exp] 260 / 1e-81 AT2G04540 640 / 0.0 Beta-ketoacyl synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF00109 [flax] [poplar] ketoacyl-synt Beta-ketoacyl synthase, N-terminal domain CL0046 [flax] [poplar] Thiolase PF02801 [flax] [poplar] Ketoacyl-synt_C Beta-ketoacyl synthase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10025390 pacid=23150897 polypeptide=Lus10025390 locus=Lus10025390.g ID=Lus10025390.BGIv1.0 annot-version=v1.0 ATGCAAGCTCTCCACTCCTTACAATCCCCACCACTCCGCTCTTCCAATCTCCCAACACCCTTCCGCCGCAATGCGACCCGACCCGCCTCACTCTCCAGGC GGAGCAACCTCGTCACCGCTGCCGCCGTTTCTTCTTCAGCAGCTCCGCAGCGGGAGACTGACCCGAAGAAGAGAGTGGTGATCACCGGGATGGGTTTGGT CTCTGTCTTTGGAAACGACGTCGATGCTTACTACGAGAAACTCCTCGCCGGGGAGAGCGGGATCACTCTGATCGATCGCTTCGACGCTTCCAAATTCCCC ACCCGGTTCGCAGGACAGATCCGCGGGTTTAATGCTCAGGGATACATTGACGGCAAGAACGATAGGAGGCTCGATGATTGCTTGAGGTACAGCATTGTTG CTGGGAAGAAGGCTCTTGAGGATGCGGATCTTGGCGGGGATAAACTTTCCAAGATTGACTTGCAGAAAGCTGGAGTGCTTGTTGGAACAGGAATGGGGGG TCTTACAGTATTCTCTGATAATGTCCAGACATTGATCGAGAAAGGGCATAGGAAAGTTTCCCCGTTCTTCATCCCTTACTCGATAACGAACATGGGTTCA GCATTGCTGGCAATTGAACTTGGGTTTATGGGACCGAATTATTCGATTTCAACTGCTTGCGCCACCTCTAACTACTGCTTCTACGCTGCTGCCAACCATA TCCGCCGTGGTGAGGCTGATTTGATGATTGCCGGTGGGAGCGAAGCTGCCGTCATTCCTATCGGGTTGGGGGGATTTGTGGCGTGTAGGGCCTTATCTCA GAGGAATGATGATCCGAAAACTGCTTCCAGGCCGTGGGACAAAGATCGAGATGGTTTTGTTATGGGCGAAGGTGCCGGAGTCTTGATTATGGAGAGTTTG GAGCATGCGATGAAACGTGGCGCACCCATCATTGCTGAGTACTTAGGAGGTGCTGTTAATTGTGATGCTTATCATATGACCGATCCAAGACGCGATGGAC TTGGCGTTTCTACTTGTATCATGAGAAGTCTCGAGGATGCTGGTGTGTCACCTGAAGAGGTGAACTACATAAATGCCCATGCGACCTCCACTCTAGCCGG TGACCTCGCGGAGATAAATGCCATAAAGAAGGTGTTCAAAAACACTTCAGAGATTAAAATCAACGCAACTAAGTCTATGATAGGCCATTGTCTTGGCGCT TCAGGAGGTTTGGAAGCAATAGCTTTAGTGAAGGCCATAAACACTGGATGGCTACATCCTTCCATCAATCAATTTAACCCGGAGCCATCAATTGAATTCA ATACAGTCGCCAACGAGAAGCAGCAACATGAAGTGAACGTTGCCATTTCGAACTCTTTCGGATTCGGAGGACACAACTCGGTCGTGGTATTCTCTGGATT CAAACCCTGA
AA sequence Show only first row Show all	>Lus10025390 pacid=23150897 polypeptide=Lus10025390 locus=Lus10025390.g ID=Lus10025390.BGIv1.0 annot-version=v1.0 MQALHSLQSPPLRSSNLPTPFRRNATRPASLSRRSNLVTAAAVSSSAAPQRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLAGESGITLIDRFDASKFP TRFAGQIRGFNAQGYIDGKNDRRLDDCLRYSIVAGKKALEDADLGGDKLSKIDLQKAGVLVGTGMGGLTVFSDNVQTLIEKGHRKVSPFFIPYSITNMGS ALLAIELGFMGPNYSISTACATSNYCFYAAANHIRRGEADLMIAGGSEAAVIPIGLGGFVACRALSQRNDDPKTASRPWDKDRDGFVMGEGAGVLIMESL EHAMKRGAPIIAEYLGGAVNCDAYHMTDPRRDGLGVSTCIMRSLEDAGVSPEEVNYINAHATSTLAGDLAEINAIKKVFKNTSEIKINATKSMIGHCLGA SGGLEAIALVKAINTGWLHPSINQFNPEPSIEFNTVANEKQQHEVNVAISNSFGFGGHNSVVVFSGFKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10025390 [exp]	0	1
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	9.2	0.9218
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	10.8	0.9296
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	17.1	0.9285
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	18.3	0.9275
AT1G51980			Insulinase (Peptidase family M...		Lus10038262 [exp]	22.0	0.9218
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Lus10008436 [exp]	22.4	0.9220
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	27.3	0.9188
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10009338 [exp]	29.2	0.9206
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10022135 [exp]	36.3	0.9060
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	37.2	0.9202

Compare expression of checked genes

Lus10025390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.