Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34450 103 / 1e-28 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) AT3G51880 61 / 4e-12 AtHMGB1, NFD1, HMGB1 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) AT1G20693 59 / 1e-11 HMGBETA1, NFD2, NFD02, HMGB2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) AT4G35570 59 / 2e-11 NFD5, NFD05, HMGD, HMGB5 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR 5, high mobility group B5 (.1) AT1G20696 59 / 2e-11 NFD3, NFD03, HMGB3 high mobility group B3 (.1.2.3) AT2G17560 57 / 1e-10 NFD4, NFD04, HMGB4 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D4, high mobility group B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015268 [exp] 179 / 3e-52 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040192 [exp] 59 / 4e-11 AT3G51880 140 / 1e-42 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10012252 [exp] 57 / 1e-10 AT1G20693 164 / 1e-53 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10028298 [exp] 57 / 2e-10 AT3G51880 134 / 6e-40 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10016025 [exp] 57 / 2e-10 AT1G20693 192 / 7e-64 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10012250 [exp] 54 / 8e-09 AT1G20696 189 / 3e-59 high mobility group B3 (.1.2.3) Lus10030738 [exp] 52 / 1e-08 AT1G20693 185 / 7e-61 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, HIGH MOBILITY GROUP BETA 1, high mobility group B2 (.1.2.3) Lus10035511 [exp] 52 / 2e-08 AT3G51880 152 / 2e-46 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Lus10013453 [exp] 51 / 8e-08 AT5G23420 160 / 5e-48 high-mobility group box 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131400 [exp] 115 / 8e-33 AT2G34450 132 / 6e-40 HMG-box (high mobility group) DNA-binding family protein (.1), HMG-box (high mobility group) DNA-binding family protein (.2) Potri.005G101400 [exp] 55 / 5e-10 AT1G20696 112 / 2e-32 high mobility group B3 (.1.2.3) Potri.010G189900 [exp] 56 / 6e-10 AT3G51880 129 / 3e-38 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.007G000900 [exp] 56 / 1e-09 AT5G23420 156 / 8e-48 high-mobility group box 6 (.1.2) Potri.002G009000 [exp] 54 / 1e-09 AT1G20696 146 / 8e-46 high mobility group B3 (.1.2.3) Potri.008G067400 [exp] 54 / 3e-09 AT3G51880 100 / 4e-27 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR D1, high mobility group B1 (.1.2.3.4) Potri.005G252600 [exp] 53 / 3e-09 AT1G20696 147 / 7e-46 high mobility group B3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0114 [flax] [poplar] HMG-box PF00505 [flax] [poplar] HMG_box HMG (high mobility group) box
Representative CDS sequence Show only first row Show all	>Lus10025391 pacid=23150842 polypeptide=Lus10025391 locus=Lus10025391.g ID=Lus10025391.BGIv1.0 annot-version=v1.0 ATGGTGGCGAAGGAAGCTTCAAAATCGACGAGATCGTCGCCTTCTGCATCTACTCCTGCTTCCTCAGCGACCGAAGAAAGGAGAATGGTGTTGAGGATTA AATCCGGTCAGGGGGCGATGAACTCCGTGACGCAAGTTAGTTTCAGCAGCGAGGAAGATCGGAGACTGGATGTGAAGAAGTCGTCGACAACGAAGAAGAA GAAGAAGAAGAAGACGAAGACGAAGAAGAAACCTGTGAAGTTCGATAGTAAAGCTCCCAAGAAGCCGCCGACTGCCTTCTTCTTTTTCTTGGAGGATTTC CGCAAAGAGTATCAAGAGCAGAATCCAGATGTCAAGAACATGGCTGATGTTGGAAAAGCTTGTGGAGGAAAATGGAAAACAATGGGACATGAGGAAAAAG TCAAGTACTACGACATTGCCACACAGAAAAGGGCAGAGTTCGAAAGTGCAATGAAAGAATATATAAAGAAGAAGGAGAGTGGCGAGCAGGAAGACTCTGA TTACGACTCGGAAGATTACTAG
AA sequence Show only first row Show all	>Lus10025391 pacid=23150842 polypeptide=Lus10025391 locus=Lus10025391.g ID=Lus10025391.BGIv1.0 annot-version=v1.0 MVAKEASKSTRSSPSASTPASSATEERRMVLRIKSGQGAMNSVTQVSFSSEEDRRLDVKKSSTTKKKKKKKTKTKKKPVKFDSKAPKKPPTAFFFFLEDF RKEYQEQNPDVKNMADVGKACGGKWKTMGHEEKVKYYDIATQKRAEFESAMKEYIKKKESGEQEDSDYDSEDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34450			HMG-box (high mobility group) ...		Lus10025391 [exp]	0	1
AT4G13200			unknown protein		Lus10011869 [exp]	1.0	0.8650
AT1G76570			Chlorophyll A-B binding family...		Lus10005421 [exp]	4.5	0.7964
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041561 [exp]	4.9	0.7975
AT5G50740			Heavy metal transport/detoxifi...		Lus10039074 [exp]	10.5	0.8040
AT1G29530			unknown protein		Lus10015254 [exp]	14.5	0.7652
AT4G10300			RmlC-like cupins superfamily p...		Lus10035659 [exp]	15.0	0.8153
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10028822 [exp]	15.7	0.7749
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10013084 [exp]	15.8	0.7671
AT5G64460			Phosphoglycerate mutase family...		Lus10020467 [exp]	16.9	0.7433
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	19.6	0.7707

Compare expression of checked genes

Lus10025391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.