Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53530 149 / 1e-46 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT1G23465 148 / 3e-46 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 142 / 2e-43 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT3G08980 62 / 1e-12 Peptidase S24/S26A/S26B/S26C family protein (.1) AT2G30440 45 / 5e-06 Plsp2B, TPP plastidic type I signal peptidase 2B, thylakoid processing peptide (.1) AT1G06870 44 / 1e-05 Plsp2A plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015272 [exp] 181 / 3e-58 AT1G53530 111 / 4e-31 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10005571 [exp] 150 / 5e-47 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 150 / 1e-42 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10033448 [exp] 79 / 2e-19 AT1G53530 110 / 1e-32 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10002492 [exp] 64 / 3e-13 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10015755 [exp] 62 / 2e-12 AT1G53530 86 / 4e-22 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10004822 [exp] 59 / 2e-11 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10022921 [exp] 45 / 7e-06 AT2G31140 282 / 1e-97 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10032753 [exp] 44 / 3e-05 AT1G06870 379 / 3e-125 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G092900 [exp] 175 / 2e-56 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.007G071400 [exp] 170 / 9e-55 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.001G380400 [exp] 159 / 1e-50 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 59 / 3e-11 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.014G036400 [exp] 45 / 9e-06 AT1G06870 377 / 8e-130 plastidic type I signal peptidase 2A, Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.006G157900 [exp] 40 / 0.0002 AT3G24590 357 / 5e-124 plastidic type i signal peptidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0299 [flax] [poplar] Peptidase_SF PF00717 [flax] [poplar] Peptidase_S24 Peptidase S24-like
Representative CDS sequence Show only first row Show all	>Lus10025393 pacid=23150785 polypeptide=Lus10025393 locus=Lus10025393.g ID=Lus10025393.BGIv1.0 annot-version=v1.0 ATGATGCGGAGCTTCATCAGAGAGGTCTGTGACCAAACCCTAATGGTGGCAAAGGCATACGCCATCCTCCACGTCACGAATTCTCACCTCTGTACACTTG CACTTGCTTACGGTCCGAGCATGGTTCCAACTATCAACCTCACCGGCGACCTAATCCTCGCCGAAAGGGTCTCCCCCCGGCTTGGCAAGGTGAAAGTTGG CGACATTGTTATAGTCCGATCGCCAGTAGTTCCGAGGAGGATTTTGACCAAACGAGTCCTTGGCATGGAGGGGCATCGAGTTACATACTTGCTCGATCCG AAAAACAGCGACGAAGTCCACACCGTTGTGGTTCCGAAGGGGCATGTTTGGATACAAGGAGATAACATCTACAATTCGAAAGATTCGAGGGACTTCGGCC CTGTTCCTTATGCCCTTGTTGAAGCTAAGTTGTTTTGGAGGGTATATATTCCTATTCTCTCAACTTTCCTCTCTCTGTATATGTACAAGGTTTAA
AA sequence Show only first row Show all	>Lus10025393 pacid=23150785 polypeptide=Lus10025393 locus=Lus10025393.g ID=Lus10025393.BGIv1.0 annot-version=v1.0 MMRSFIREVCDQTLMVAKAYAILHVTNSHLCTLALAYGPSMVPTINLTGDLILAERVSPRLGKVKVGDIVIVRSPVVPRRILTKRVLGMEGHRVTYLLDP KNSDEVHTVVVPKGHVWIQGDNIYNSKDSRDFGPVPYALVEAKLFWRVYIPILSTFLSLYMYKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	4.9	0.9113
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	6.0	0.8987
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10035357 [exp]	6.3	0.8907
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10038824 [exp]	8.0	0.8708
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	8.1	0.8971
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	9.7	0.8885
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10037076 [exp]	14.0	0.8728
AT1G49350			pfkB-like carbohydrate kinase ...		Lus10009862 [exp]	14.9	0.8589
AT5G20040		ATIPT9	ARABIDOPSIS THALIANA ISOPENTEN...		Lus10027928 [exp]	16.7	0.8773
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	19.8	0.8504

Compare expression of checked genes

Lus10025393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.