Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34200 97 / 6e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 80 / 8e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 74 / 7e-16 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 74 / 9e-16 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G59000 71 / 3e-14 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 54 / 4e-08 RING/U-box superfamily protein (.1.2.3.4) AT5G03180 54 / 5e-08 RING/U-box superfamily protein (.1.2) AT5G63780 52 / 1e-07 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 52 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT2G45530 50 / 4e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015273 [exp] 256 / 5e-85 AT2G34200 106 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 81 / 5e-18 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 80 / 1e-17 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035549 [exp] 80 / 2e-17 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 76 / 4e-16 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 76 / 6e-16 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 74 / 1e-15 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 68 / 1e-13 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 67 / 3e-13 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068800 [exp] 115 / 7e-30 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G059200 [exp] 114 / 3e-29 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G195100 [exp] 87 / 9e-21 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 86 / 5e-20 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 79 / 3e-17 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 73 / 2e-15 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 73 / 3e-15 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 70 / 2e-14 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G129000 [exp] 56 / 1e-08 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.009G013300 [exp] 54 / 4e-08 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10025394 pacid=23150860 polypeptide=Lus10025394 locus=Lus10025394.g ID=Lus10025394.BGIv1.0 annot-version=v1.0 ATGGAATTGGCTCAGAATTCTTGCCAGGTGGCTGGGAGTTTCAGTGATTTGGATGCAGGAGTCAGCTCGGCAAATGGTCGAACAGGTGGTGGGCATGAAA AAACCGATGCATTTGATGAAAGTGGGGAATCTGACGAGTTTAAGGCGGCCAAGGCTTCGAAATCGGGATCGTATGTGATTGAGATGAACTGGGATGGCGG GGAGAAAGTTTGCAGGATCTGTCATTTGAGCTCTGAAGGGTCGATGGAGGTAGTGGCGGCTGCTCCTGGTGTGGTAGTGACATCAATGGAGCTGATTCAG CTTGGTTGTGGATGTAAAGATGAGCTTGGTGTTGCTCATTCTCATTGTGGGGAAGCCTGGTTCAAGCTCAAAGGCAACAGAGTGTGCGAAATCTGCGGGG AGATGGCGAAGAACATCACAGGCATATCCGACAACATCGGATTCATGGAGGAGTGGAACCAGATGAGACTAATCCTAATCCCCCCACACGACCAAAACAG AAGCCGGCGGTGGAGGAGGATGCTGGAGGGGACAGCCATTCTGCAACTTCCTGATGGCATGCCTGGTAATAGCCTTCGTGCTGCCATGGTTCTTCCGTGT AAATATGTTCTAAGGATAATAGTTCTTTCAATGGCGGAATTTGTTTATATATGCACTACTACACTTGGTAGAGTCGGTCTTTTGTTTACAGGAAATAGAG AATACTGTAAGAAGAAATGCTTTGGTTCTTTTGCTTGTCTTTGTTATTTTAACACGTGGAAAACCTGTGAAATTTACAGATACTGCGGAGTCTCAGGAAT TGGTTGGTTTTGGTATGAATGA
AA sequence Show only first row Show all	>Lus10025394 pacid=23150860 polypeptide=Lus10025394 locus=Lus10025394.g ID=Lus10025394.BGIv1.0 annot-version=v1.0 MELAQNSCQVAGSFSDLDAGVSSANGRTGGGHEKTDAFDESGESDEFKAAKASKSGSYVIEMNWDGGEKVCRICHLSSEGSMEVVAAAPGVVVTSMELIQ LGCGCKDELGVAHSHCGEAWFKLKGNRVCEICGEMAKNITGISDNIGFMEEWNQMRLILIPPHDQNRSRRWRRMLEGTAILQLPDGMPGNSLRAAMVLPC KYVLRIIVLSMAEFVYICTTTLGRVGLLFTGNREYCKKKCFGSFACLCYFNTWKTCEIYRYCGVSGIGWFWYE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10025394 [exp]	0	1
AT2G34200			RING/FYVE/PHD zinc finger supe...		Lus10015273 [exp]	2.2	0.7915
AT4G22900			Protein of unknown function (D...		Lus10014139 [exp]	7.3	0.7429
AT5G58110			chaperone binding;ATPase activ...		Lus10040580 [exp]	12.3	0.7679
AT3G11590			unknown protein		Lus10005200 [exp]	13.3	0.7077
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	17.4	0.7631
AT4G17370			Oxidoreductase family protein ...		Lus10028967 [exp]	17.5	0.7205
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	24.1	0.7528
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	28.1	0.7381
AT5G45840			Leucine-rich repeat protein ki...		Lus10017439 [exp]	28.6	0.7133
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	28.9	0.7514

Compare expression of checked genes

Lus10025394 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.