Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18700 313 / 1e-104 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT1G29230 293 / 1e-96 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G45810 285 / 5e-94 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT2G34180 266 / 3e-86 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G58380 169 / 3e-49 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT5G07070 168 / 5e-49 CIPK2, SnRK3.2 SNF1-RELATED PROTEIN KINASE 3.2, CBL-interacting protein kinase 2 (.1) AT5G45820 166 / 2e-48 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G30960 161 / 2e-46 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 159 / 1e-45 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT1G01140 152 / 4e-43 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015275 [exp] 431 / 8e-151 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007284 [exp] 357 / 1e-122 AT4G18700 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10029231 [exp] 242 / 2e-80 AT4G18700 279 / 2e-92 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10007283 [exp] 177 / 1e-52 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10021852 [exp] 177 / 2e-52 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 175 / 9e-52 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10008582 [exp] 171 / 2e-50 AT5G58380 570 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10022749 [exp] 161 / 3e-46 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 160 / 9e-46 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G067600 [exp] 319 / 3e-106 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 317 / 6e-106 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.011G067500 [exp] 192 / 2e-58 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.006G186200 [exp] 183 / 5e-55 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 176 / 3e-52 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 176 / 9e-52 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 170 / 7e-50 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 166 / 4e-48 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G048800 [exp] 164 / 8e-48 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G119200 [exp] 164 / 3e-47 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Lus10025397 pacid=23150786 polypeptide=Lus10025397 locus=Lus10025397.g ID=Lus10025397.BGIv1.0 annot-version=v1.0 ATGGCTGGATATTTACCTTTCCATGATCAGAACATTATGTTGATGTATAAGAAGATCTACAAGGGCGATTTTCGTTGCCCTAGATGGTTTTCTCCTGAAT TAGCTAAGCTTTTAGTAAAGCTTCTCGACACGAATCCTGCAACTCGAATCACGATCGCTGAAGTTATGGAGAATCGATGGTTCAAGAGAGGGTTTAAACA CATCAAATTCTACATAGAGGATGATAGAGTGTACAATGTGGTTGACGAATTGAATCAGGAACAGGACGATGCTAGCTCCTGCTGCTCGGAATCTTCAATG TCCGAGTCCGATTCAGAAATGGAAGCTCGAAGAACAACACGAGCTCCCGGTTCATTGCCTAGACCAGCGAGTTTGAATGCTTTCGATATAATCTCATTCT CTCCAGGGTTCGACTTGTCTGGATTGTTTGAAGAAGGTAGTAGCGGGGAAGGGACGAGGTTTGTGACGGGAGCTCCCGTTTCAAAGATCATTTCGAAATT GGAGGAGATTGCTAACCTGGTTCGGTTTACAGTCAGAAAGAAGGACTACAGAGTTAGCTTGGAAGGGTCGAGGGAAGGCGTGAAGGGGCCACTGACGATT GCGGCCGAGATATTCGAGCTTACACCGAAACTTGTGGTTGTTGAAGTGAAGAAGAAGAGTGGGGATAAAGGTGAGTATGAAGAGTTCTGTGAGAAGGAGT TGAAACCCGGGTTGCAGAAACTGATGCTGGAGGAATCTGAAGCTGCTGCTGCGAAGAAGAAGAAGAAGGATGATCCGATCGTCGATTCGCCTGGATTGTC TACTGATTCTTTGCTGTCTATCGAGTAA
AA sequence Show only first row Show all	>Lus10025397 pacid=23150786 polypeptide=Lus10025397 locus=Lus10025397.g ID=Lus10025397.BGIv1.0 annot-version=v1.0 MAGYLPFHDQNIMLMYKKIYKGDFRCPRWFSPELAKLLVKLLDTNPATRITIAEVMENRWFKRGFKHIKFYIEDDRVYNVVDELNQEQDDASSCCSESSM SESDSEMEARRTTRAPGSLPRPASLNAFDIISFSPGFDLSGLFEEGSSGEGTRFVTGAPVSKIISKLEEIANLVRFTVRKKDYRVSLEGSREGVKGPLTI AAEIFELTPKLVVVEVKKKSGDKGEYEEFCEKELKPGLQKLMLEESEAAAAKKKKKDDPIVDSPGLSTDSLLSIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	0	1
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Lus10039621 [exp]	1.0	0.9149
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017651 [exp]	2.0	0.9028
AT5G51040			unknown protein		Lus10043024 [exp]	2.0	0.8845
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10027505 [exp]	2.2	0.8709
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10017583 [exp]	2.8	0.8638
AT1G73650			Protein of unknown function (D...		Lus10031343 [exp]	3.6	0.8476
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10032157 [exp]	4.6	0.8999
AT2G37110			PLAC8 family protein (.1)		Lus10015072 [exp]	4.9	0.8543
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	6.5	0.8638
AT4G09670			Oxidoreductase family protein ...		Lus10001327 [exp]	6.7	0.8622

Compare expression of checked genes

Lus10025397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.